 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf03693g10004.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
HD-ZIP |
Protein Properties |
Length: 208aa MW: 24198.3 Da PI: 6.5349 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf03693g10004.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 50 | 102 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++++eq++ Le+ F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k
Niben101Scf03693g10004.1 50 KRKLSDEQVNLLEQSFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWK 102
45899***********************************************9 PP
|
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 49 | 140 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +d+ + e++rLe+ev +
Niben101Scf03693g10004.1 49 RKRKLSDEQVNLLEQSFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSDHDTNVVEKCRLESEVLK 133
8************************************************************************************ PP
HD-ZIP_I/II 87 Lreelke 93
L+++l+e
Niben101Scf03693g10004.1 134 LKDQLSE 140
****986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 208 aa
Download sequence Send
to blast |
MNHQVAADEM VLISRYYPDI YTHLVPQQGE TKPRRRRKKK QGEGSGVMRK RKLSDEQVNL 60 LEQSFGNEHK LESERKDKLA LELGLDPRQV AVWFQNRRAR WKSKKLEEEY SKLKSDHDTN 120 VVEKCRLESE VLKLKDQLSE AEKEIQRLLL ERCDGVSSNN SPSTSSFSME AAMEPPFLGE 180 FGMEGLDNVF YTPDNTYVQG LDWVNLYI
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 33 | 39 | RRRRKKK |
2 | 33 | 51 | RRRRKKKQGEGSGVMRKRK |
3 | 37 | 51 | KKKQGEGSGVMRKRK |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |