PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03693g08008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 542aa    MW: 60311.3 Da    PI: 5.3578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03693g08008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.62.4e-1001825412374
                      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs
  Niben101Scf03693g08008.1 182 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFS 260
                               678*************************999************************......778888999999************ PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166
                               ++sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L+
  Niben101Scf03693g08008.1 261 NLSPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLT 343
                               ************************************************877666689***********66..99999******** PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhn 249
                               +fA+el++ f++++++ +++e l+++++++  gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++
  Niben101Scf03693g08008.1 344 QFARELNIGFDIDFVLIRTFELLSFKAIKFMDGEKTAVLLSPAIFRRI------GS---GFVNDLRRISPNMVVHVDSEgmMGYG 419
                               **********************************************98......44...8*******************656669 PP

                      GRAS 250 sesFlerflealeyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               ++sF + +++ le+ys+l++sl +a++   +  ++++k+E+++l ++iv++va+ g++        ++W++++ +aGF+pv ls+
  Niben101Scf03693g08008.1 420 TASFRQTVIDGLEFYSTLLESLeAANIVGGNcgDWMRKIENFVLFPKIVEMVAAVGRR------GDGSWKDAMVAAGFRPVGLSQ 498
                               **********************77788777789************************8......889****************** PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +a  qa++ll +v+++g++v +++++++l+W+dr+Lv++SaWr
  Niben101Scf03693g08008.1 499 FADFQADCLLGRVQVRGFHVAKRQAEMLLCWHDRALVATSAWR 541
                               ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.622155521IPR005202Transcription factor GRAS
PfamPF035148.3E-98182541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MKVPFSSNDN VCSKPLISNN NNNQLRNATF PAATNGPNLC YEPKSVLELR RSPNPIVEKQ  60
VITNPDFSAL CGGDDPLQLG DHVLSNFEDW DSLTRELGLQ DDSASLSKSN PQLSLTQSES  120
LNQFHNLSEF SADSTQFPTS DFSFSENFPQ QFQSVNQGNY INALDLSGDI HQNNWNVGFD  180
YVDELIRFAE CFETNAFQLA HVILARLNQR LRSAAGKPLQ RAAFYFKEAL QAQLAGSTRQ  240
TRPASSSDVI QTIKSYKIFS NLSPIPMFSS FTANQAVLEA VDGSMLVHVI DFDIGLGGHW  300
ASFMKELADK AECRKANAPV LRITALVPEE YAVESRLIRE NLTQFARELN IGFDIDFVLI  360
RTFELLSFKA IKFMDGEKTA VLLSPAIFRR IGSGFVNDLR RISPNMVVHV DSEGMMGYGT  420
ASFRQTVIDG LEFYSTLLES LEAANIVGGN CGDWMRKIEN FVLFPKIVEM VAAVGRRGDG  480
SWKDAMVAAG FRPVGLSQFA DFQADCLLGR VQVRGFHVAK RQAEMLLCWH DRALVATSAW  540
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2518954027378Protein SCARECROW
5b3h_A2e-2518954026377Protein SCARECROW
5b3h_D2e-2518954026377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433149.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-146SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1S3WZT50.0A0A1S3WZT5_TOBAC; scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-148GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]