PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03693g07009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 525aa    MW: 54680.6 Da    PI: 8.4945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03693g07009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056688123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C+k F r  nL+ H r H
  Niben101Scf03693g07009.1 66 FVCEICSKGFQRDQNLQLHRRGH 88
                              89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.3E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPADPDNSSA MNDSTGSGEV SVSSSGNQVP PQKESAKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSSQ EVKKRVYVCP ETTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKFQSDLKA HSKICGTREY KCDCGTLFSR RDSFITHRAF  180
CDVLAQESAK AVPEKLSNVT NEEPKTQAIA ASSSPPPTPT ASPPAAESQP PPPALPPPAA  240
PMPLPPAAIP QSTTVISFVS SVQNPELREN PNPNSTGTAG KQVMEETTAL ASLTGSCSSS  300
SSSCNNGSTS SNVFGSLFAS STASGTLPSQ APGFTDLFRA VAPERVPELA PPSSAEPISL  360
CLAMSHGSSI FRPAGQERRQ YAPVPQPAMS ATALLQKAAQ MGAAATSSSL LRGLGVMSSP  420
PSNGQQEWSG RPMETNGASL AAGLGLGLPC DAGSGLKELM LGTPSVFGPK HPTLDLLGLG  480
MAASGGPSPG LSALLTSMGS NLDMATAAGS FGSGDFSGKD LGRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-22128190364Zinc finger protein JACKDAW
5b3h_F6e-22128190364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265974.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-161IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A314L1J90.0A0A314L1J9_NICAT; Protein indeterminate-domain 2
STRINGXP_009803272.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]