PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03561g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 479aa MW: 55626.1 Da PI: 6.7331

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03561g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.7	3.9e-18	76	154	6	89
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 + +evGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ +++w+v ++ leHnH l Niben101Scf03561g01010.1 76 FESEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMMRMRMVGSKRWRVLEVTLEHNHLL 154 5679********************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-15	76	154	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.841	357	393	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	368	395	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MEEASLDSEV DLTGQGSGRL QEIESDGLDD QNSEQIESDE LFSQSGGQIE SDALDDQNGF 60 TDGQKQFVAP AVGMEFESEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR 120 KETRTGCPAM MRMRMVGSKR WRVLEVTLEH NHLLGAKAYK SIKKTGAGNK KKLDSNCDAE 180 VRTIKLYRAL KPFDFEATWR FMIQRFGVGD HEWLLSLYDD RAKWAPVYLK DTFFAGMTTA 240 ISDETLTAFF DKYLHKQTPL KEFLDKYELA LQKKYKEEAV ADIESRNPNP ELKTRCSFEL 300 QLSKVYTREI FKKFQLEVEE MYSCFSTRQL HVDGQMVIFL VKEHVLEEGN RREIRDYEVL 360 YNRAAAEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY KRLRASDLES 420 SSTESTEHVQ WFSQLYRSAI QVVEEGVISL DHYKVALNAF EESLTRVHHI EEKLNKNSL

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MEEASLDSEV DLTGQGSGRL QEIESDGLDD QNSEQIESDE LFSQSGGQIE SDALDDQNGF  60
TDGQKQFVAP AVGMEFESEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNRLR  120
KETRTGCPAM MRMRMVGSKR WRVLEVTLEH NHLLGAKAYK SIKKTGAGNK KKLDSNCDAE  180
VRTIKLYRAL KPFDFEATWR FMIQRFGVGD HEWLLSLYDD RAKWAPVYLK DTFFAGMTTA  240
ISDETLTAFF DKYLHKQTPL KEFLDKYELA LQKKYKEEAV ADIESRNPNP ELKTRCSFEL  300
QLSKVYTREI FKKFQLEVEE MYSCFSTRQL HVDGQMVIFL VKEHVLEEGN RREIRDYEVL  360
YNRAAAEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSK YILSRWKKDY KRLRASDLES  420
SSTESTEHVQ WFSQLYRSAI QVVEEGVISL DHYKVALNAF EESLTRVHHI EEKLNKNSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766776.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Refseq	XP_016487947.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	1e-141	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2P5YJ11	0.0	A0A2P5YJ11_GOSBA; Uncharacterized protein
STRING	XP_009766776.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-141	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]