PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf03551g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 344aa MW: 38232.8 Da PI: 9.1597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03551g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.6	4.1e-17	50	99	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f +Lre++P++ ++K +Ka+ L ++veYI+ Lq Niben101Scf03551g01010.1 50 RLKHSATEQRRRSKINDRFLKLREIIPHS----DQKRDKASFLLEVVEYIQLLQ 99 789***********************9....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-18	45	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-21	45	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.158	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.95E-13	50	103	No hit	No description
Pfam	PF00010	2.0E-14	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MMKSATNAHE DDDDEEEEFI VKKESPSHSR GNLSVKVDRK SSDEKPNTPR LKHSATEQRR 60 RSKINDRFLK LREIIPHSDQ KRDKASFLLE VVEYIQLLQE KVHKYEGSYQ GSENKTSILP 120 WDKCHPMTKG FIDHFQGTNS ASSHGIVCAG KLDESKIAIS ARSPVNGQTL EPNRISAVKQ 180 SSQLSELPNK AAKHCEQPNA FPFCGSTSIV SLQSRLAPDA DSLEKKSQSQ FWLSKSMSDC 240 AVTNDKLKGQ EVSIEGGTIS ISSVYSQRLL NALKQALQSS GVDLSQASMS VKIDLGKRVN 300 DSLNASVSNF KGDNISTSNR PNQQLIDTRT REDSVHAFKR LKTS

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MMKSATNAHE DDDDEEEEFI VKKESPSHSR GNLSVKVDRK SSDEKPNTPR LKHSATEQRR  60
RSKINDRFLK LREIIPHSDQ KRDKASFLLE VVEYIQLLQE KVHKYEGSYQ GSENKTSILP  120
WDKCHPMTKG FIDHFQGTNS ASSHGIVCAG KLDESKIAIS ARSPVNGQTL EPNRISAVKQ  180
SSQLSELPNK AAKHCEQPNA FPFCGSTSIV SLQSRLAPDA DSLEKKSQSQ FWLSKSMSDC  240
AVTNDKLKGQ EVSIEGGTIS ISSVYSQRLL NALKQALQSS GVDLSQASMS VKIDLGKRVN  300
DSLNASVSNF KGDNISTSNR PNQQLIDTRT REDSVHAFKR LKTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009587237.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
TrEMBL	A0A1S4ACK6	0.0	A0A1S4ACK6_TOBAC; transcription factor BIM2-like isoform X1
STRING	XP_009587237.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	6e-56	BES1-interacting Myc-like protein 2