PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03551g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 322aa MW: 35237.5 Da PI: 6.44

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03551g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.7e-39	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+s Niben101Scf03551g00007.1 30 NQQVLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRS 89 68899****************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-25	29	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.665	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MQDIHPIGGG GGRFFGGGGD RRLRPNHHQN QQVLKCPRCD SPNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRSK PKPAPPSDAV AEAADDASEE HKSNSNSSSE 120 SSSLTATTIA AAAANTCGAA TAEVVSAASS NSASTFLNFH ESNFFLPNST NSSFDHQPLM 180 DHSTEGHIFQ DIGNFTNLMT SSNDPSVVGF NMMEIPAYRL PENQNSNEHW NQPAKMVGTD 240 QPVNDLKMEQ MDTGFMNQTG RVEFGLQHSR VNNSEIAPLD WQTGGGRGEG DHGLYDLAGT 300 VDQSYWSQTQ WGENDHSLNF LP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	18	GGRFFGGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225784.1	1e-169	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A314KSY8	1e-167	A0A314KSY8_NICAT; Dof zinc finger protein dof5.4
STRING	XP_009779672.1	1e-167	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-32	DOF zinc finger protein 1