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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03540g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 1106aa MW: 121993 Da PI: 6.6278 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.8 | 1.7e-22 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+ Niben101Scf03540g00021.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDS 217 99*****************************9545444.38******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++++l+++++r+ Niben101Scf03540g00021.1 218 VLFI--RDEKQQLLLGIRRA 235 ****..5688889****997 PP | |||||||
2 | Auxin_resp | 119.5 | 2.6e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ Niben101Scf03540g00021.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343 79*******************************99879********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.5E-44 | 124 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.10E-19 | 133 | 225 | No hit | No description |
SMART | SM01019 | 5.6E-23 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-20 | 134 | 235 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 260 | 343 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 28.139 | 985 | 1069 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.4E-6 | 986 | 1070 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.63E-7 | 1003 | 1063 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1106 aa Download sequence Send to blast |
MKTPGNIAGA QQAAANVNPA EGEKKSINAE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLVCLLHNVT LHADPETDEV YAQMTLQPVP SFDKEALLRS 120 DLSMKTNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDYSMQPP AQELVARDLH 180 DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKATYSSQVS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRTRVSI 360 WEIDPVTAPF FICPTPPFFG SKRPRLPGMP DDDCSDLDGL FKRTMPWLGD DFGMKDPQGL 420 LGLSLVQWMN MQQNPSMQQP NYLHSLSGSV LHNVGGGADL SRQLGLSAAP QLPQHNTLQF 480 GTQRPNQQGQ VAAATLSPVG SIMQSQQQQL SDISQQPRQN LINQSVPTNQ VQAQLLQAQS 540 LVQSQNVLQQ QQSLQNQLQR TLPQQQQIMN QTQQQSFMPS QPSDPLNQQM HFSDNQLQLQ 600 LLQKLHQQQQ SLLAQQSVLQ QQSQLGPIQD QQKRLLDVSQ NFSRSLATSQ MLDMSQTTST 660 STSLSQSQVV QQQMTSQSNF RFSQPNQQSK VHQQPGIQPE LPGQVGQNLP PATNQLSTNC 720 SSLLTGAAGG GQSVVTDDIP SCSTSPSTNN CQNAVQPIMN GRMHRGTAAG DEATQSSVPL 780 LNSSGFEAMS TNSNLDKDLK HKSDVKPSVN ISKSPNHGFL APQTYLNTTG PHMDYLDSSS 840 SATSVCFSQN DVQLQQTTNP LSFNNQPVIF RDSQDGEVQG DLRNNVAFGS NMDNQLGLPM 900 MPDPLVTNSL MDSRKDLSNN ISSGGGMLSS YENPKEAQPE LSSSMVSQSF GVPDMAFNSI 960 DSTINDGSFM NRGAWAPPPQ VPRLRTYTKV YKRGAVGRSI DIARYSGYED LKQDLARRFG 1020 IEGQLEDRQR IGWKLVYVDH ENDVLLVGDD PWEEFVNCVR CIKILSPQEV QQMSLDGDFG 1080 NSLQNQACSS SDGGNVGQMD KNKVKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-170 | 23 | 364 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235972.1 | 0.0 | PREDICTED: auxin response factor 19-like isoform X1 | ||||
TrEMBL | A0A1J6KZH3 | 0.0 | A0A1J6KZH3_NICAT; Auxin response factor | ||||
STRING | XP_009762809.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |