PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03528g03001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 396aa MW: 45394.5 Da PI: 8.0308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03528g03001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	42	167	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkat Niben101Scf03528g03001.1 42 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYNPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKAT 125 79*************************.89***********888889**************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g d+ + +++++ +glkktLvfy+g+apkg +++W+m+eyrl Niben101Scf03528g03001.1 126 GADRMIRNESSRPIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 167 **************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.246	41	188	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-55	41	188	IPR003441	NAC domain
Pfam	PF02365	1.8E-24	43	167	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MAIAPFTSMS QSQQQQDDSS SNKRDHDHDH DADDEHEHDM VMPGFRFHPT EEELVEFYLR 60 RKVEGKRFNV ELITFLDLYR YNPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG 120 YWKATGADRM IRNESSRPIG LKKTLVFYSG KAPKGIRSSW IMNEYRLPHH ETERLQKAEI 180 SLCRVYKRPG VEDHPSLPHS LPTTRASSSS SSRAHHSIIK KHHHPQVVQD HPLLSINFVG 240 QSNSQQIDGK LNENSTASST STDHHHHHRH VGTSLGLSSH QITALTTSTL TPFSSLISPN 300 NTAVVDDLHR LVNFQNLHNH QQHFQNLSNH NIPAASIATH QFSTLLQPQL LPQQPQPNLL 360 LQGSLQPSAF SERLWDWNSV QTDASCKDYQ PNNPFK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MAIAPFTSMS QSQQQQDDSS SNKRDHDHDH DADDEHEHDM VMPGFRFHPT EEELVEFYLR  60
RKVEGKRFNV ELITFLDLYR YNPWELPAMA AIGEKEWFFY VPRDRKYRNG DRPNRVTTSG  120
YWKATGADRM IRNESSRPIG LKKTLVFYSG KAPKGIRSSW IMNEYRLPHH ETERLQKAEI  180
SLCRVYKRPG VEDHPSLPHS LPTTRASSSS SSRAHHSIIK KHHHPQVVQD HPLLSINFVG  240
QSNSQQIDGK LNENSTASST STDHHHHHRH VGTSLGLSSH QITALTTSTL TPFSSLISPN  300
NTAVVDDLHR LVNFQNLHNH QQHFQNLSNH NIPAASIATH QFSTLLQPQL LPQQPQPNLL  360
LQGSLQPSAF SERLWDWNSV QTDASCKDYQ PNNPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	43	188	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	43	188	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	43	188	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	43	188	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	43	188	22	168	NAC domain-containing protein 19
3swm_B	1e-54	43	188	22	168	NAC domain-containing protein 19
3swm_C	1e-54	43	188	22	168	NAC domain-containing protein 19
3swm_D	1e-54	43	188	22	168	NAC domain-containing protein 19
3swp_A	1e-54	43	188	22	168	NAC domain-containing protein 19
3swp_B	1e-54	43	188	22	168	NAC domain-containing protein 19
3swp_C	1e-54	43	188	22	168	NAC domain-containing protein 19
3swp_D	1e-54	43	188	22	168	NAC domain-containing protein 19
4dul_A	1e-54	43	188	19	165	NAC domain-containing protein 19
4dul_B	1e-54	43	188	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009613092.1	0.0	PREDICTED: NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-116	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1U7VSP6	0.0	A0A1U7VSP6_NICSY; transcription factor JUNGBRUNNEN 1-like
STRING	XP_009613092.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-113	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]