PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03518g05008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 321aa    MW: 37468.4 Da    PI: 4.5838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03518g05008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.34e-36111032103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k ye++ede++++lisw+++ n f+++d  +f++++LpkyFkhsnf+SFvRQLn+YgF+k+ +++         weF+++sF
  Niben101Scf03518g05008.1  11 FLLKCYEMVEDESTDSLISWDQSDNYFIIWDVPKFSSQLLPKYFKHSNFSSFVRQLNIYGFHKTVTDR---------WEFANDSF 86 
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++i r+k++
  Niben101Scf03518g05008.1  87 LKGQKHLLKNIVRRKQS 103
                               *************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.7E-537100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-367100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-327100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-181134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3011100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-184961IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVKSFENVAP FLLKCYEMVE DESTDSLISW DQSDNYFIIW DVPKFSSQLL PKYFKHSNFS  60
SFVRQLNIYG FHKTVTDRWE FANDSFLKGQ KHLLKNIVRR KQSSVVQKKS SHQVEIKSCK  120
SEENKYLGLW EEVENLKIDK NVLTEELVKL RQQQQNSESK LILLREQLKG MEKHQQQMLS  180
FIVMAMQSPN FLVQFFQPKE NNLRVSENGN NILSEVEDYS EHMPSDRAIV RYHPPTHEAA  240
EPLSAELETA VDTQKPMELD LSCDEIKDLF SNIDFFSGLM DEKLLSFENS GPLTLPDLPD  300
DEDMLEQLLL SQPITENKED E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-24710516124Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770996.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_016505243.10.0PREDICTED: heat stress transcription factor A-8
RefseqXP_019260655.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A1S4CVV80.0A0A1S4CVV8_TOBAC; heat stress transcription factor A-8
TrEMBLA0A1U7W1C20.0A0A1U7W1C2_NICSY; heat stress transcription factor A-8
TrEMBLA0A314LB770.0A0A314LB77_NICAT; Heat stress transcription factor a-8
STRINGXP_009770996.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.15e-77heat shock transcription factor A8