PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03502g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 470aa    MW: 53800.3 Da    PI: 6.593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03502g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-1130119398
                               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                               +  +++++  ++  ++p +fa+++ ++  ++  + le +sg++Wev++    + g++ l+ GW++F +   +  g f++F ++ r
  Niben101Scf03502g00010.1  30 QRCMKPSAYFLCAQMIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSEGQICLGIGWQDFSDFYSISCGHFLMFGYNAR 110
                               55677788888999**********5454444..***************..999999**************************999 PP

                               SEE..EEEEE- CS
                        B3  88 sefelvvkvfr 98 
                               s f  +v++f+
  Niben101Scf03502g00010.1 111 SHF--NVTIFD 119
                               999..999987 PP
2B348.51.6e-152593281689
                               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                ++p kfa+++ +++++  +l+l+ + +  W+vk+  + + +   +t GWk Fv +n+Lk+gD++v++++++++
  Niben101Scf03502g00010.1 259 QSIPLKFARKYFMQNHG--KLVLRVPGSGFWTVKC--TLRTRNAKITCGWKAFVLDNKLKSGDVCVLEVIKDTK 328
                               39*********777544..7***************..555555679**********************988643 PP
3B350.24.6e-16376465598
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               l+++++ +   l++++   +++   +++  +++l+ ++ rsW +++++  k gr  l +GWk+Fv++n++k+gD++vF+ ++r++
  Niben101Scf03502g00010.1 376 LMQPSYVSGPSLTISRVISSKFF--PTRYSDVVLQVPNKRSWALNCTVGTKNGR--LNSGWKKFVQDNNIKVGDVCVFEQVSRTK 456
                               45555555555877777776664..345559***************77555555..***********************989899 PP

                               E..EEEEE- CS
                        B3  90 felvvkvfr 98 
                               f ++v +f 
  Niben101Scf03502g00010.1 457 FLFHVYIFP 465
                               988888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.28E-1524121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1528121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.98328121IPR003340B3 DNA binding domain
CDDcd100172.79E-1028119No hitNo description
SMARTSM010193.3E-529121IPR003340B3 DNA binding domain
PfamPF023628.3E-831119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.5E-21228336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-18231330IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-16234338No hitNo description
SMARTSM010194.7E-10251340IPR003340B3 DNA binding domain
PfamPF023623.1E-13258329IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503261340IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-23365464IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-21366464IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-18371465No hitNo description
PROSITE profilePS5086312.576372467IPR003340B3 DNA binding domain
PfamPF023622.6E-14372465IPR003340B3 DNA binding domain
SMARTSM010192.6E-13372467IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MWNYLTYVEP NTECAGMYCQ LYRSSTVFIQ RCMKPSAYFL CAQMIPEDFA SRYCKNMLNP  60
VYLEVPSGEV WEVEVVHSEG QICLGIGWQD FSDFYSISCG HFLMFGYNAR SHFNVTIFDL  120
SASEIEYPTK EIESDDSIDI SDVVEHSVEN LSHGPLGQER KRKREEEDKI PVNVQAKVIE  180
EEKSQGNVVS LERSEGYREQ EQESNIVTSK SDAERDEERA ENYQRAKAFT SKNPFIISFM  240
HPSYVMRPHN LFIIDLFWQS IPLKFARKYF MQNHGKLVLR VPGSGFWTVK CTLRTRNAKI  300
TCGWKAFVLD NKLKSGDVCV LEVIKDTKLL LIDVTIFPGA SDSTNESINP EPSVPCSPAY  360
QRAKAFTSEN PFFIYLMQPS YVSGPSLTIS RVISSKFFPT RYSDVVLQVP NKRSWALNCT  420
VGTKNGRLNS GWKKFVQDNN IKVGDVCVFE QVSRTKFLFH VYIFPAVEGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475122.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1S4AEL80.0A0A1S4AEL8_TOBAC; B3 domain-containing transcription factor VRN1-like
STRINGXP_009774258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-26B3 family protein