PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03437g02045.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 390aa    MW: 43709.8 Da    PI: 4.4962
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03437g02045.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-1251107155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Niben101Scf03437g02045.1  51 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEEAAAHAYDLAALKYWG 107
                               57*******************99999998988888********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.33E-1551116IPR016177DNA-binding domain
CDDcd000183.11E-1151164No hitNo description
PfamPF008473.3E-851107IPR001471AP2/ERF domain
PROSITE profilePS5103218.84852115IPR001471AP2/ERF domain
SMARTSM003801.5E-2052121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1352115IPR001471AP2/ERF domain
PRINTSPR003674.7E-65364IPR001471AP2/ERF domain
PROSITE profilePS510329.018104162IPR001471AP2/ERF domain
SMARTSM003800.06125168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-6136163IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-5136164IPR016177DNA-binding domain
PRINTSPR003674.7E-6144164IPR001471AP2/ERF domain
PROSITE profilePS510329.229151228IPR001471AP2/ERF domain
SMARTSM003800.042195234IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-5203230IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.1E-6203229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAKTSKSNQK NGTNTTTSSS SSSNKSDGYA IGKAKRTRKS VPRDSPPQRS SIYRGVTRHR  60
WTGRYEAHLW DKNCWNETQN KKGRQGAYDD EEAAAHAYDL AALKYWGQDT ILNFPVLTYE  120
NELKEMEAQS KEEYIATQEE AATAYDMAAI EYRGLNAVTN FDLSRYIKWL RPSNLTNNIT  180
TINNPSANTE PNPNPNADEI GATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPSN  240
LTNNITTINN PSANTEPNPN PNADEIHSMP DTKEEMEFCF LQQQQQQQQS SNSDATDVAL  300
PCPAVGTTAS SALGLLLQSS KFKEMLERTS AADCPETPPE SDRPRRSFPD DIQTYFDCQE  360
SSSFIEEHDI IFGDLDSFAS PNMFQCELDS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615687.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3YZU80.0A0A1S3YZU8_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009615687.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.13e-59AP2 family protein