 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf03398g06007.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 314aa MW: 34297.1 Da PI: 9.7307 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf03398g06007.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57 | 3.2e-18 | 130 | 184 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184
778899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 128 | 3.9e-41 | 130 | 220 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
+kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLHKELQ 214
69*********************************************************************************** PP
HD-ZIP_I/II 86 eLreelk 92
eLr +lk
Niben101Scf03398g06007.1 215 ELR-ALK 220
**9.555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MELGLSLGDI NTTTTTTAAA SSKSFFLSKN IKTSSSDQDQ RSSENGLSGN GGLPAARAFD 60
VNRVPPAGTE EVSSPNSIAS SFRMDFGLFR SANIIGNKRN SDSGGGNDGG EPERASSRAS 120
DEDENGVNTR KKLRLSKEQS AYLEESFKEH HTLNPKQKLA LAKQLNLRPR QVEVWFQNRR 180
ARTKLKQTEV DCEYLKRCCE SLTEENRRLH KELQELRALK SSNPFYMQLP ATTLTMCPAC 240
ERMATTTSAT ASPPTTAAGT TTPKSPTPIP TTTTTTTTSD SMPKAIPFLN SRPRFFPFNT 300
TTNSPNHPHQ SAAS
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 128 | 134 | TRKKLRL |
| 2 | 178 | 186 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
