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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf03398g06007.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
HD-ZIP |
Protein Properties |
Length: 314aa MW: 34297.1 Da PI: 9.7307 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf03398g06007.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57 | 3.2e-18 | 130 | 184 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184
778899***********************************************98 PP
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2 | HD-ZIP_I/II | 128 | 3.9e-41 | 130 | 220 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85
+kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
Niben101Scf03398g06007.1 130 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLHKELQ 214
69*********************************************************************************** PP
HD-ZIP_I/II 86 eLreelk 92
eLr +lk
Niben101Scf03398g06007.1 215 ELR-ALK 220
**9.555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MELGLSLGDI NTTTTTTAAA SSKSFFLSKN IKTSSSDQDQ RSSENGLSGN GGLPAARAFD 60 VNRVPPAGTE EVSSPNSIAS SFRMDFGLFR SANIIGNKRN SDSGGGNDGG EPERASSRAS 120 DEDENGVNTR KKLRLSKEQS AYLEESFKEH HTLNPKQKLA LAKQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEYLKRCCE SLTEENRRLH KELQELRALK SSNPFYMQLP ATTLTMCPAC 240 ERMATTTSAT ASPPTTAAGT TTPKSPTPIP TTTTTTTTSD SMPKAIPFLN SRPRFFPFNT 300 TTNSPNHPHQ SAAS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 128 | 134 | TRKKLRL |
2 | 178 | 186 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |