PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03326g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 499aa MW: 55734.4 Da PI: 5.1402

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03326g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.6	1.5e-36	17	109	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+y++++d+++++++sws++ nsfvv++ efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F Niben101Scf03326g02004.1 17 FLSKTYDMVNDPSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 92 9**************************************************************999.........**** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkkse 103 +g+k+ll++i r+k + Niben101Scf03326g02004.1 93 LRGHKHLLKSISRRKPS 109 ************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.7E-40	8	101	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.5E-35	12	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.9E-61	13	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-19	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.5E-32	17	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-19	55	67	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	56	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.0E-19	68	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MDCVHENTAV GNSPPPFLSK TYDMVNDPST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF 60 KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ 120 VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELELVEL KQQQQATDHQ MQTVGQRVQL 180 MEKRQQQMMS FLAKAMQSPG FVAQLVHQQN GNNRRIAGMN KKRRLPDHDE ENVAGNPVNM 240 SRDGQIVRYQ PSMNEAAKAL LRQILKINTP GRLDNRLKNT NDLLTDNPLS PKNALSGDTS 300 SRISGVTLSE VLSMSSQSHI MSDSGFPFTS CSSVMSESQS STTVVPGEAK VPKLPETDAL 360 NSLTDHDLPE FSQEQRINRQ ETFGITGLKR SETGNVPYID NTQAILDGVT AIAPDGFSAD 420 TYVDILLDDV PKLPAINDIF WDQILSASPL TGDTDEIGME DGLEKEEDFL GVQENDLDKL 480 NHMCHLTEQM GLLSSAAQI

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MDCVHENTAV GNSPPPFLSK TYDMVNDPST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ  120
VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELELVEL KQQQQATDHQ MQTVGQRVQL  180
MEKRQQQMMS FLAKAMQSPG FVAQLVHQQN GNNRRIAGMN KKRRLPDHDE ENVAGNPVNM  240
SRDGQIVRYQ PSMNEAAKAL LRQILKINTP GRLDNRLKNT NDLLTDNPLS PKNALSGDTS  300
SRISGVTLSE VLSMSSQSHI MSDSGFPFTS CSSVMSESQS STTVVPGEAK VPKLPETDAL  360
NSLTDHDLPE FSQEQRINRQ ETFGITGLKR SETGNVPYID NTQAILDGVT AIAPDGFSAD  420
TYVDILLDDV PKLPAINDIF WDQILSASPL TGDTDEIGME DGLEKEEDFL GVQENDLDKL  480
NHMCHLTEQM GLLSSAAQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-26	15	106	27	129	Heat shock factor protein 1
5d5v_B	2e-26	15	106	27	129	Heat shock factor protein 1
5d5v_D	2e-26	15	106	27	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240189.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-151	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1J6JRQ3	0.0	A0A1J6JRQ3_NICAT; Heat stress transcription factor a-1
STRING	XP_009623591.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-126	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]