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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03309g03008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 128aa MW: 15288.5 Da PI: 8.4553 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.3 | 2.4e-12 | 32 | 86 | 37 | 99 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +++W vkl ++++ l++GWk+F+++++L gD ++F+++g++ef v++f++ Niben101Scf03309g03008.1 32 AVLRRGSKKWLVKL--NGQR----LEEGWKKFAEEHDLWLGDLFIFRHEGEMEF--EVTIFDS 86 5666788*******..8887....***********************9999999..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-16 | 5 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-9 | 8 | 85 | No hit | No description |
SMART | SM01019 | 4.2E-9 | 10 | 87 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-15 | 26 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-8 | 30 | 86 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.87 | 33 | 87 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MKVRPAKPHF FKPILPGFKR ALYLKGHGHE HAVLRRGSKK WLVKLNGQRL EEGWKKFAEE 60 HDLWLGDLFI FRHEGEMEFE VTIFDSSHCD REYAEYLQDE EEAHTVKDPS KKFEIKGRMY 120 YTMNAVYS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019254328.1 | 2e-70 | PREDICTED: B3 domain-containing protein REM10-like isoform X1 | ||||
TrEMBL | A0A1J6HXR2 | 2e-69 | A0A1J6HXR2_NICAT; B3 domain-containing protein rem6 (Fragment) | ||||
TrEMBL | A0A1U7WNN7 | 5e-68 | A0A1U7WNN7_NICSY; B3 domain-containing protein REM5-like isoform X4 | ||||
TrEMBL | A0A1U7WSI2 | 5e-68 | A0A1U7WSI2_NICSY; B3 domain-containing protein REM5-like isoform X3 | ||||
STRING | XP_009781505.1 | 1e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31680.1 | 8e-23 | B3 family protein |