PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03274g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 413aa    MW: 46226.3 Da    PI: 7.4412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03274g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.54.1e-3168173199
                               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                               f+kv tpsdv+k++rlv+pk++ae++     +++ +++  + +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v
  Niben101Scf03274g00004.1  68 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLMNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIV 152
                               89****************************955666889********************************************** PP

                               EEEE-.SS.SEE..EEEEE-S CS
                        B3  81 vFkld.gr.sefelvvkvfrk 99 
                                F++  g+  + +l++ ++r+
  Niben101Scf03274g00004.1 153 SFQRGaGElVKHRLFIDWRRR 173
                               ***665777788888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-4161175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-3165173IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-2666156No hitNo description
PfamPF023625.7E-2968173IPR003340B3 DNA binding domain
SMARTSM010191.0E-2268174IPR003340B3 DNA binding domain
PROSITE profilePS5086313.98768169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCPFSLSSSS SSTSSSYHNH HHHQQQQHRE STELMLMDSS PTATRNHGDD DEVAGGEVHH  60
LIEREHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSSS NDKGGLLMNF EDRNGKPWRF  120
RYSYWNSSQS YVMTKGWSRF VKEKKLDAGD IVSFQRGAGE LVKHRLFIDW RRRPDAPDMN  180
PIMVPHHFSN WNHGRLFLQP FQRGPPVPSF TQQHPHSQHS HYLLLEASSH IPQQQSQNYP  240
HSYVYGIGNT SPAYYNTCFN NSSISTNATV VNANPCAGGS GNYVRSGATA SQLLSQHELE  300
IMQMQRGCSS VRGSIGCEPM VFNSVPVVQG KVAAKRLRLF GVNMDCPMDH SDLFSSSTIP  360
TTYSHAPHFS SSSSTSSTPS VQLRNFNSPL EVVPSDEESS DKGKASMSLD LDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-61611741114B3 domain-containing transcription factor NGA1
5os9_B1e-61611741114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803160.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A1U7YWM80.0A0A1U7YWM8_NICSY; B3 domain-containing transcription factor NGA1-like
STRINGXP_009803160.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28172350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.14e-69B3 family protein