PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03268g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 468aa    MW: 52718.1 Da    PI: 6.6013
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03268g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS37.82.8e-1216326012107
                      GRAS  12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                                ++g+l+++q+lL  l+e +s +gd+++R aa  ++AL + l+   ++++ +a+  +++ ++++ +   ++l  f+++sP++++ 
  Niben101Scf03268g01008.1 163 YTAGNLNRVQHLLYVLHEFSSLNGDANHRSAARGLQALTHYLSTpCSTSTLSAFsGVTTFASTDPKFFENSLINFNDISPWFRIP 247
                               5789***************************************9744455555526666666667777777777*********** PP

                      GRAS  95 hltaNqaIleave 107
                               + +aN+ Il+ + 
  Niben101Scf03268g01008.1 248 NSIANSSILQILG 260
                               *********9875 PP
2GRAS63.54.2e-20319467161324
                      GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                 ++L  fA+++++++++n +    l++l+ + ++ +++E l+++ +l+lh+l ++s + +           sl+Pk vv++e++
  Niben101Scf03268g01008.1 319 FSSQLLAFAKAININLQINRMENYPLQNLDSQVINSSSDEILVICAQLRLHNLKHNSPDERT----------SLEPKGVVLSENN 393
                               56899***************8777*****************************966666665..........9************ PP

                      GRAS 246 adh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                               +d+  ns ++F+++f++ +ey ++++ds+++ +    + r   Er++++ e+ +++++ g++    +e++ekW er++++GF
  Niben101Scf03268g01008.1 394 MDCscNScGDFATGFARQVEYLWKFLDSISVAY----KGREGAERRMMEGEAAKALTNMGEM----NERKEKWCERMQTVGF 467
                               8875444259*******************9995....89999999999*************9....88888**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.388126468IPR005202Transcription factor GRAS
PfamPF035149.6E-10163260IPR005202Transcription factor GRAS
PfamPF035141.5E-17319467IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MTIDELEPNP TSDPISEWLD GTLSYIPSFL DELYSPDDFY GDSWWVLGES IDQERQINRR  60
PSTLDLTSQP RALSLWSQSS FQATRRHWFN PRKGKEMILT TIPRCRRIIR TDADDRETIV  120
DQRVPNKKSA GHKKATHKST GNNSNNKKED GQSSCLTLVL LQYTAGNLNR VQHLLYVLHE  180
FSSLNGDANH RSAARGLQAL THYLSTPCST STLSAFSGVT TFASTDPKFF ENSLINFNDI  240
SPWFRIPNSI ANSSILQILG EQINPRTYTF LILDSMANVA RGVDPSIRRA ATIGSSNSYI  300
ENDQLRNSPF VIGPAGYNFS SQLLAFAKAI NINLQINRME NYPLQNLDSQ VINSSSDEIL  360
VICAQLRLHN LKHNSPDERT SLEPKGVVLS ENNMDCSCNS CGDFATGFAR QVEYLWKFLD  420
SISVAYKGRE GAERRMMEGE AAKALTNMGE MNERKEKWCE RMQTVGFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227735.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
TrEMBLA0A314KR120.0A0A314KR12_NICAT; Nodulation-signaling pathway 1 protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-75GRAS family protein