PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03256g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 481aa    MW: 54520.1 Da    PI: 7.4669
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03256g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.9e-11431479247
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               +rW+t E+e l  +v+++G g+W++I  t     + Rt+ ++k++w+++
  Niben101Scf03256g01001.1 431 KRWSTIEEETLRSGVQKYGVGNWRLIFDTYHeifEDRTPVDLKDKWRNL 479
                               69*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.433425481IPR017930Myb domain
SuperFamilySSF466897.48E-15427480IPR009057Homeodomain-like
SMARTSM007173.4E-4429481IPR001005SANT/Myb domain
CDDcd116604.16E-17431480No hitNo description
PfamPF002499.8E-8431479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-11431479IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDMDISRWIL EFVLWQPLED TIFNALIGVL PLPNEDSRLK KALILRKIQS EMSNGSVSEK  60
ILELLEVMEE LYTQEGIESS EAMKAAYCAV AVDCTVMFLN SKSEKVNYFE AVKRIWKNRI  120
NKMEKVENVG VVSAELWKWR DEIEAALWED RRCQNVIMQS KSISAVVAVK VFVKEAKERI  180
GPPFLEVVAE TLRRDDAVKA YLDLENKEER GERIESLLIA GQDLNCCNHD KEANTRNALR  240
KRKHVAFKRT RGTTTAGVCK GVKIADSAEL GVEASRVQED LLHTPKIDKA QEALKLSSLE  300
LRAGVKDPLP EALELAETLM SLGRDSSARQ PAENENGRAP HLVVDSNGVV QANGGNEDDQ  360
LIGLQNAAPK PSIMARNSTA HTFEWNDSID NSSEGSPSSG RRFTLPTPRR TKVSPLKKYE  420
FKKFTKRRKS KRWSTIEEET LRSGVQKYGV GNWRLIFDTY HEIFEDRTPV DLKDKWRNLT  480
S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250121.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
RefseqXP_019250122.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
RefseqXP_019250123.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
RefseqXP_019250124.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
RefseqXP_019250125.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
RefseqXP_019250126.10.0PREDICTED: uncharacterized protein LOC109229215 isoform X1
TrEMBLA0A1J6ISS50.0A0A1J6ISS5_NICAT; Uncharacterized protein
STRINGXP_009587848.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-17MYB_related family protein