PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03218g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 156aa MW: 17331.2 Da PI: 9.9938

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03218g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	30	52	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Niben101Scf03218g00007.1 30 FECKTCNKRFPSFQALGGHRASH 52 89**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.46E-6	26	57	No hit	No description
Pfam	PF13912	6.8E-13	30	54	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.471	30	57	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	32	52	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.6E-5	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MTVMKRSREV EAEAMANCAL MLLSTSSNGF ECKTCNKRFP SFQALGGHRA SHKRPKSLAG 60 AGDFLVQSKK NKMHECCSME FSLGQALGGH MRRHRDEVAG KTMIPVLTKS NSSKRIFCGL 120 DLDLNLTPDV DVELKLWPKA PVSSHVLRIF YLSPFS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628782.1	8e-82	PREDICTED: zinc finger protein ZAT12-like
Refseq	XP_016486485.1	8e-82	PREDICTED: zinc finger protein ZAT12-like
Swissprot	Q9SLD4	5e-30	ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBL	A0A1S4BC32	2e-80	A0A1S4BC32_TOBAC; zinc finger protein ZAT12-like
STRING	XP_009628782.1	3e-81	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	2e-32	C2H2 family protein