PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf03213g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 161aa MW: 18560.3 Da PI: 9.0395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03213g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ Fs +L H+r+H Niben101Scf03213g02008.1 80 HECSFCGEEFSLGQDLGGHMRKH 102 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-8	35	102	No hit	No description
PROSITE profile	PS50157	9.349	37	64	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.3E-11	37	60	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.58	37	59	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	39	59	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-4	78	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.055	80	107	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.3E-8	80	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.092	80	102	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	82	102	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MTLKRSREEE SISVEKLAMA NCADIMKRNQ SLGRKIFECK TCKKQFDSFQ ALGGHRASHK 60 NTANKLMMTL LTIPIEPKKH ECSFCGEEFS LGQDLGGHMR KHRDQLNQLQ HKKTKFQEKS 120 DESDQQAIKE KKHNLNSERI LFFDLNLTAY ENELMAGLTS I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801628.1	1e-105	PREDICTED: zinc finger protein ZAT12-like
TrEMBL	A0A1U7YER2	1e-103	A0A1U7YER2_NICSY; zinc finger protein ZAT12-like
STRING	XP_009801628.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-29	C2H2 family protein