PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03206g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 697aa    MW: 76646.8 Da    PI: 7.015
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03206g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23122223199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD
  Niben101Scf03206g01008.1 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGD 204
                               89****************************996555555..89****************************************** PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                               ++vF   + +++ l+v+++r+
  Niben101Scf03206g01008.1 205 SIVFL--RAENGDLCVGIRRA 223
                               *****..4488999****997 PP
2Auxin_resp110.71.4e-36289372183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa+ a+++++Fev+Y+Pr+st+eF++k++ v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Niben101Scf03206g01008.1 289 AASFAASGQPFEVIYYPRVSTPEFCIKASLVKSALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVSDPMRWPDSPWRLLQ 372
                               6778999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-29114225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-37115226IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-21121222No hitNo description
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF023628.8E-22122223IPR003340B3 DNA binding domain
PfamPF065071.9E-31289372IPR010525Auxin response factor
PROSITE profilePS5174519.234609689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MITFMDPKDK VKEMDKCLDS QLWHACAGSM VQMPPISSQV FYFPQGHSEH ACGNVNFRSS  60
NIRIPSYIPC KVSAIKYMAD PETDEVFAKI RLIPVSKNEV EFDDDGVVGM NGLDNQDKPT  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PETSSGWNPA  240
GGNCMVPYGG FSSFLREDEN KLMRNGGNGN SSGNLMNSGK VKAESVIEAA SFAASGQPFE  300
VIYYPRVSTP EFCIKASLVK SALQIRWCSG MRFKMPFETE DSSRISWFMG TISSVQVSDP  360
MRWPDSPWRL LQVTWDEPDL LQNVKRVSPW LVELVSNMPT IHLSPFSPPR KKLRLPQHPD  420
FPLDGHHLPM PAFSGNHLLG PSSPFGCLPD NTPAGMQGAR HAQYGLSLSD IHFNKLHSSL  480
FPVGIPPLDQ AAAHPRPPNS PMIRKPCNSE NISCLLTMGN STHDTTKKSD IGKAPQLVLF  540
GQPILTEQQI SLSCSGDTVS TVRTGNSSSD GNADKIGNVS DGSGSALNQR GLTVSLPRDT  600
FQSEPNTEIG HCKVFMESED VGRTMDLSSI GSYEELCRKL ASMFGIENSE MLSHVLYRDI  660
TGTVKQLGDE PYSDFIRTAR RLTILTDSSS DNVGLRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-80839341388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230355.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A314KJD00.0A0A314KJD0_NICAT; Auxin response factor
STRINGXP_009786798.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]