PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03202g13012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 485aa    MW: 55235.7 Da    PI: 4.8031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03202g13012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS170.81.1e-521264842373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL +  ea+++g++ela+ ++  ++    p g++++R+a+     L  ++ +         +    ++++s++   a+k+f++
  Niben101Scf03202g13012.1 126 HHLLAAYGEAIENGHKELAEVIIRSIKGKIYPLGESLERIASN----LFLKIED---------QEDYLKQESSKNLEVAFKAFYQ 197
                               799999**********************************975....7888988.........2222222235666678999*** PP

                      GRAS  87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               ++Pi kf+h++aN+aIle++  + e++Hi+Dfd+++G+QWp+ ++a+ +R++    l++T +++     kee  ++++rL ++A+
  Niben101Scf03202g13012.1 198 IFPIGKFAHFAANSAILESIPDDvETIHIVDFDMGEGIQWPPVIEAICQRRKA---LKLTSIKK----TKEESTSIKRRLLDYAK 275
                               ********************9999**************************766...********....99*************** PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqe. 245
                                +g++++++ +   ++e+l+ e+ r+k+    +E l+ n++++l ++ + +  ++        +e+L +  s+   +v++ + e 
  Niben101Scf03202g13012.1 276 PFGLRLQIEEM---TIEELSSEMRRMKKrgngNEWLVFNCMYKLPHMGKTRCRIHAleflnLATELLLANSSTHRGLVTFGDGEa 357
                               *********98...788888888888777889***************97777766644444556666666777888******994 PP

                      GRAS 246 ..adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                  +hn+++F + f + l yy ++f+sle  +p+   e+r  +E  +l++++++    ++ e      ++++  +  +e G++  
  Niben101Scf03202g13012.1 358 mdNSHNTNTFSAFFNKNLIYYQSIFESLELYFPAYLaEARLAMESLFLAPQVCSFSWFQNWE------EMRSSCDSCGEIGLQGK 436
                               33457899************************99877***************9988887777......555668999******** PP

                      GRAS 328 plsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaW 373
                               ++s+++  qak l+++ +     r+ee+ ++++vl Wk+ pLvsvS W
  Niben101Scf03202g13012.1 437 RISKENLLQAKELVNEREtPLKVRIEEQrQHEMVLEWKGTPLVSVSTW 484
                               ****************99655588885549999*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.59599463IPR005202Transcription factor GRAS
PfamPF035143.7E-50126484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMQPDLLHDS WSSTFPQTDF ESQKYGVSDS SLNSSGISFS DFTSLFPDDV FTDLSMDDLE  60
FDYVCKWLND SGSEEENGNM NISISCEMQK NGNLWSPAIS GVSTNSAISL VIPGNSKQMD  120
TQISLHHLLA AYGEAIENGH KELAEVIIRS IKGKIYPLGE SLERIASNLF LKIEDQEDYL  180
KQESSKNLEV AFKAFYQIFP IGKFAHFAAN SAILESIPDD VETIHIVDFD MGEGIQWPPV  240
IEAICQRRKA LKLTSIKKTK EESTSIKRRL LDYAKPFGLR LQIEEMTIEE LSSEMRRMKK  300
RGNGNEWLVF NCMYKLPHMG KTRCRIHALE FLNLATELLL ANSSTHRGLV TFGDGEAMDN  360
SHNTNTFSAF FNKNLIYYQS IFESLELYFP AYLAEARLAM ESLFLAPQVC SFSWFQNWEE  420
MRSSCDSCGE IGLQGKRISK ENLLQAKELV NERETPLKVR IEEQRQHEMV LEWKGTPLVS  480
VSTWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1313448428378Protein SCARECROW
5b3h_A1e-1313448427377Protein SCARECROW
5b3h_D1e-1313448427377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226130.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A314KSF50.0A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.14e-22RGA-like protein 3