PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03202g11003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 375aa MW: 41933.6 Da PI: 8.3969

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03202g11003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk++l++m++kgL ++hvkSHLQ+YR+ Niben101Scf03202g11003.1 61 PRLRWTPDLHLRFIHAVERLGGQDRATPKSVLQMMNIKGLNIAHVKSHLQMYRS 114 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-30	57	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.249	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-15	59	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-23	61	116	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-9	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MMEDSGETGC NTKTSSNSGK YEDDEDNNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM 60 PRLRWTPDLH LRFIHAVERL GGQDRATPKS VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ 120 SQGFAHHRLF MEGGDPNIYN LSQLPMFPTF HQRLNSTFRY EDAWNCHGNW TRGQSKLDRS 180 NRGFYTTLTE RIFGSNHGRE ANENLCKRNP SFISERSTLP THEIKDEMGL SLECESHSGE 240 LTPILSHIAA KAQARAIYLQ KQTPLKRKVS DCDLDLNLSL GVKPRNGIDN LHCTDSSKML 300 PYSCPILQKC TIFGGSNTQS RSNNDDNDND NGSSLSLSLS SPLSSSKVTG FKENGNSNAT 360 TENARRGAST LDLTL

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MMEDSGETGC NTKTSSNSGK YEDDEDNNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM  60
PRLRWTPDLH LRFIHAVERL GGQDRATPKS VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ  120
SQGFAHHRLF MEGGDPNIYN LSQLPMFPTF HQRLNSTFRY EDAWNCHGNW TRGQSKLDRS  180
NRGFYTTLTE RIFGSNHGRE ANENLCKRNP SFISERSTLP THEIKDEMGL SLECESHSGE  240
LTPILSHIAA KAQARAIYLQ KQTPLKRKVS DCDLDLNLSL GVKPRNGIDN LHCTDSSKML  300
PYSCPILQKC TIFGGSNTQS RSNNDDNDND NGSSLSLSLS SPLSSSKVTG FKENGNSNAT  360
TENARRGAST LDLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-18	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-18	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-18	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-18	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	62	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009804663.1	0.0	PREDICTED: two-component response regulator ARR10-like
Refseq	XP_016478876.1	0.0	PREDICTED: two-component response regulator ORR24-like
TrEMBL	A0A1S4AQL4	0.0	A0A1S4AQL4_TOBAC; two-component response regulator ORR24-like
TrEMBL	A0A1U7YNJ2	0.0	A0A1U7YNJ2_NICSY; two-component response regulator ARR10-like
STRING	XP_009804663.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-58	G2-like family protein