PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf03169g06008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 172aa MW: 19936.3 Da PI: 7.9753

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03169g06008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	15	69	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F++n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k Niben101Scf03169g06008.1 15 CHKKRLTQDQVRLLEISFNSNNKLDSDKKSQLAQELGLPPRQVAIWYQNKRARWK 69 567789************************************************9 PP
2	HD-ZIP_I/II	115.2	3.8e-37	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +k+rl+++qv+lLE sF++++kL++++K++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ +++nerL+ eve+ Niben101Scf03169g06008.1 16 HKKRLTQDQVRLLEISFNSNNKLDSDKKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKVLQQRFDNAMSDNERLKLEVER 100 69********************************************************************************* PP HD-ZIP_I/II 87 Lreelke 93 L+eel++ Niben101Scf03169g06008.1 101 LKEELNK 107 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.18	11	71	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	14	75	IPR001356	Homeobox domain
Pfam	PF00046	7.4E-17	16	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.39E-18	16	80	IPR009057	Homeodomain-like
CDD	cd00086	3.82E-15	16	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.5E-20	18	78	IPR009057	Homeodomain-like
PRINTS	PR00031	7.4E-6	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.4E-6	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MDFFNSQTRK NNLKCHKKRL TQDQVRLLEI SFNSNNKLDS DKKSQLAQEL GLPPRQVAIW 60 YQNKRARWKS QSLEVDYKVL QQRFDNAMSD NERLKLEVER LKEELNKAQE MLLAFNTTTN 120 NYSSISSSCD EVGSSCLQLH DQSKHNLDKE LYACLIGDEG HFGHNFSASS MS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	18	RKNNLKCHKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	1e-120	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1J6IZQ9	1e-119	A0A1J6IZQ9_NICAT; Homeobox-leucine zipper protein athb-52
STRING	XP_009800499.1	1e-120	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	8e-28	homeobox protein 52