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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf03169g04009.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 304aa MW: 34397.9 Da PI: 8.4518 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf03169g04009.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 107.6 | 1.5e-33 | 62 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74
lp+G++F+P+d+e++ e+L++kv +++ + + i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk
Niben101Scf03169g04009.1 62 LPAGVKFDPSDHEIL-EHLEAKVISDTlklhplI---DefiLtIDGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRK 141
799***********9.99*****99995554443...143333666657**********.566677888**************** PP
NAM 75 nratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+r+++ + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l
Niben101Scf03169g04009.1 142 RRKVHteidggETRWHKTGKTRPVYI-GGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 202
**744446655778************.**************66589**************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MTWCSQSNGE TALPIISAPP SDESNIMITS KVDHEIRIIT CPSCGHSIEL QNQRGIHDLP 60
GLPAGVKFDP SDHEILEHLE AKVISDTLKL HPLIDEFILT IDGENGICYT HPEKLPGVSK 120
DGQVRHFFHR PSKAYTTGTR KRRKVHTEID GGETRWHKTG KTRPVYIGGV LKGYKKILVL 180
YTNYGRQRKP EKTNWVMHQY HLGENEEEKD GELVISKVFY QTQPRQCGSL SIRKPVDNNK 240
SRSLSRQDSP ILKTTNFVDY YNPPFISYDI GSQNRDSSPQ LIQNLVVYGD SSSFVIPSNA 300
SKEK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
