PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf03160g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 231aa MW: 26609.2 Da PI: 8.8269

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03160g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.1	1.9e-45	5	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 pGfrF Pt+eel+++yL++k+egk+ el++vi+ v iy+++Pw+Lp+ + +++++w+fF++r++++a+g r+ r+t+sgy Niben101Scf03160g01004.1 5 SPGFRFYPTEEELISFYLHNKLEGKRPELDRVIPVVTIYNLDPWHLPNlpgeLCMGDTEQWFFFVPRQEREARGGRPCRTTTSGY 89 69*************************999**********9657763334677********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ + v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Niben101Scf03160g01004.1 90 WKATGSPNYVYSSESKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 135 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-48	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	47.882	4	163	IPR003441	NAC domain
Pfam	PF02365	8.3E-24	6	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVEISPGFRF YPTEEELISF YLHNKLEGKR PELDRVIPVV TIYNLDPWHL PNLPGELCMG 60 DTEQWFFFVP RQEREARGGR PCRTTTSGYW KATGSPNYVY SSESKVIGVK KSMVFYKGKA 120 PTGRKTKWKM NEYRAIEQET STSSTFSIPK LRHEMSLCRV YVISGSFRAF DRRPVATVTR 180 DTPAVKNQEL AADRDNIISS AISVKNESKS YNIVESDCEN LNGWEQINWI N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-37	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-37	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-37	2	161	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-37	2	161	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-37	2	161	18	166	NAC domain-containing protein 19
3swm_B	6e-37	2	161	18	166	NAC domain-containing protein 19
3swm_C	6e-37	2	161	18	166	NAC domain-containing protein 19
3swm_D	6e-37	2	161	18	166	NAC domain-containing protein 19
3swp_A	6e-37	2	161	18	166	NAC domain-containing protein 19
3swp_B	6e-37	2	161	18	166	NAC domain-containing protein 19
3swp_C	6e-37	2	161	18	166	NAC domain-containing protein 19
3swp_D	6e-37	2	161	18	166	NAC domain-containing protein 19
4dul_A	6e-37	2	161	15	163	NAC domain-containing protein 19
4dul_B	6e-37	2	161	15	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311942.1	1e-162	NAC domain-containing protein 90
Refseq	XP_009759500.1	1e-162	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-85	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U7VCH0	1e-161	A0A1U7VCH0_NICSY; NAC domain-containing protein 90
TrEMBL	Q9SXQ0	1e-161	Q9SXQ0_TOBAC; NAC domain-containing protein 90
STRING	XP_009759500.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-87	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]