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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03160g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26609.2 Da PI: 8.8269 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.1 | 1.9e-45 | 5 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 pGfrF Pt+eel+++yL++k+egk+ el++vi+ v iy+++Pw+Lp+ + +++++w+fF++r++++a+g r+ r+t+sgy Niben101Scf03160g01004.1 5 SPGFRFYPTEEELISFYLHNKLEGKRPELDRVIPVVTIYNLDPWHLPNlpgeLCMGDTEQWFFFVPRQEREARGGRPCRTTTSGY 89 69***************************999**************9657763334677************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ + v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Niben101Scf03160g01004.1 90 WKATGSPNYVYSSESKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 135 ********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-48 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.882 | 4 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-24 | 6 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVEISPGFRF YPTEEELISF YLHNKLEGKR PELDRVIPVV TIYNLDPWHL PNLPGELCMG 60 DTEQWFFFVP RQEREARGGR PCRTTTSGYW KATGSPNYVY SSESKVIGVK KSMVFYKGKA 120 PTGRKTKWKM NEYRAIEQET STSSTFSIPK LRHEMSLCRV YVISGSFRAF DRRPVATVTR 180 DTPAVKNQEL AADRDNIISS AISVKNESKS YNIVESDCEN LNGWEQINWI N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-37 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-37 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-37 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-37 | 2 | 161 | 15 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_B | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_C | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swm_D | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_A | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_B | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_C | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
3swp_D | 6e-37 | 2 | 161 | 18 | 166 | NAC domain-containing protein 19 |
4dul_A | 6e-37 | 2 | 161 | 15 | 163 | NAC domain-containing protein 19 |
4dul_B | 6e-37 | 2 | 161 | 15 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311942.1 | 1e-162 | NAC domain-containing protein 90 | ||||
Refseq | XP_009759500.1 | 1e-162 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 6e-85 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A1U7VCH0 | 1e-161 | A0A1U7VCH0_NICSY; NAC domain-containing protein 90 | ||||
TrEMBL | Q9SXQ0 | 1e-161 | Q9SXQ0_TOBAC; NAC domain-containing protein 90 | ||||
STRING | XP_009759500.1 | 1e-162 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-87 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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