PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03111g01017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 323aa    MW: 36203.3 Da    PI: 9.479
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03111g01017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.5e-17182215134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C+ C+tt+TplWR+g  g+ktLCnaCG+++rk +
  Niben101Scf03111g01017.1 182 CADCNTTTTPLWRSGLKGPKTLCNACGIRQRKAR 215
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.1E-18176227IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12179215No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14180215IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.321180212IPR000679Zinc finger, GATA-type
CDDcd002022.56E-11181211No hitNo description
PROSITE patternPS003440182207IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14182215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTPTDHMTNS TPPPFRFLLN NEDYDLNNSL VSPHNNYQAS SSYSYSSPYQ FFFNSTTNQN  60
QTGYYHRDEY HTPLHQPEGD NEGGSYEVDM KNKVGNGLKL TLWKRKDKYH ENQNQKHTVK  120
WMSSKIKASD QTSMENTTNN TSIKLKLEDQ KKQQPSYPLE STDYSSNSSN NSSNNNIPIR  180
VCADCNTTTT PLWRSGLKGP KTLCNACGIR QRKARRAMVA AAEAAAANGE TLTTETSSSS  240
SMKKKMKHLH KEKITKVNVT LSNKKRCKFG PSSSSNTAPK NLGNFEDFLI NLTNNLALHQ  300
IFPQDETEAA ILLMALSSGL VHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251436.11e-158PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1J6I5Z71e-157A0A1J6I5Z7_NICAT; Putative gata transcription factor 22
STRINGXP_009768461.11e-155(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.18e-15cytokinin-responsive gata factor 1