PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03072g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 482aa    MW: 51798.3 Da    PI: 9.5115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03072g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-056688123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C+k F r  nL+ H r H
  Niben101Scf03072g05002.1 66 FVCEICSKGFQRDQNLQLHRRGH 88
                              89*******************88 PP
2zf-C2H215.26e-05142164123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+Lk H + +
  Niben101Scf03072g05002.1 142 WKCEKCSKKYAVQSDLKAHSKIC 164
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-76588No hitNo description
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355220107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.7E-7137162No hitNo description
PROSITE profilePS501578.808142170IPR007087Zinc finger, C2H2
SMARTSM0035561142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MPADPDNSSA MNDSAGSGEV SVSSSGNQVP PQKESAKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRSGQ EVKKRVYVCP ESTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCEKCSKK YAVQSDLKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DVLAQESAKT VQPEKPPNVT NEEPKTQAIA ASSSPPLTPT ASPPAAESQP  240
PPPPALPPPA APKPLPPAAI PPSTTVISFV STVPNPELRE NLNPNSTGTA GKQVNEETTA  300
LASLTGSCSS SSSSCSNGST SSNVFGSLFA SSTASGSLPS QAPGFTDLFR AMAPERIPEM  360
APLSSAEPIS LCLAMSHGSS IFRPAGQERR QYAPVPQPAM SATALLQKAA QMGAAATSSS  420
LLRGFGVMSS SSPSNGQQEW SGRPMEXKSG GNMLQYHNRP CLQQHYCRRQ LRWVQLQRAH  480
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33138199364Zinc finger protein JACKDAW
5b3h_F2e-33138199364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265974.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-148IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A314L1J90.0A0A314L1J9_NICAT; Protein indeterminate-domain 2
STRINGXP_009803272.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]