PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03072g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 491aa    MW: 54537.2 Da    PI: 6.6261
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03072g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.27.8e-1011314902374
                      GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      ++ +++++s+++++++++++k+fs
  Niben101Scf03072g03007.1 131 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------STRQTRPASSSDVIQTIKSYKIFS 209
                               678*************************999************************......778888999999************ PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166
                               ++sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L+
  Niben101Scf03072g03007.1 210 NISPIPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLT 292
                               ************************************************877666689***********66..99999******** PP

                      GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhn 249
                               +fA+el++ fe+++++ +++e l+++++++  gE++aV l+ +++r         s    +++ ++++sP++vv+v++e  + ++
  Niben101Scf03072g03007.1 293 QFARELNIGFEIDFVLIRTFELLSFKAIKFMDGEKTAVLLSPAIFRRI------GS---VFVNDLRRISPNMVVHVDSEglMGYG 368
                               *********************************************998......44...8*******************87788* PP

                      GRAS 250 sesFlerflealeyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               ++sF + +++ le+ys+l++sl +a+++  +  ++++k+E+++l ++iv++va+ g++        ++W++++ +aGF+pv ls+
  Niben101Scf03072g03007.1 369 TASFRQTVIDGLEFYSTLLESLeAANIGGGNcgDWMRKIENFVLFPKIVEMVAAVGRR------GGGSWKDAMVAAGFRPVGLSQ 447
                               **********************88999999999************************8......99******************* PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +a  qa++ll +v+++g++v +++ +++l+W+dr+Lv++SaWr
  Niben101Scf03072g03007.1 448 FADFQADCLLGRVQVRGFHVAKRQVEMLLCWHDRALVATSAWR 490
                               ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.033104470IPR005202Transcription factor GRAS
PfamPF035142.7E-98131490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKVPFSSNDN VSSKPLISNN NNNNQLRNAT FPATTNGPNL CYEPKSVLEL RRSPSPIVEK  60
QVITNPDLSA LCGGDDPLQL ADSTQFPTSD FSFSENFPQQ FQSVNQGNYI NALDLSGDIH  120
QNNWNVGFDY VDELIRFAEC FETNAFQLAH VILARLNQRL RSAAGKPLQR AAFYFKEALQ  180
AQLAGSTRQT RPASSSDVIQ TIKSYKIFSN ISPIPMFSSF TANQAVLEAV DGSMLVHVID  240
FDIGLGGHWA SFMKELADKA ECRKANAPVL RITALVPEEY AVESRLIREN LTQFARELNI  300
GFEIDFVLIR TFELLSFKAI KFMDGEKTAV LLSPAIFRRI GSVFVNDLRR ISPNMVVHVD  360
SEGLMGYGTA SFRQTVIDGL EFYSTLLESL EAANIGGGNC GDWMRKIENF VLFPKIVEMV  420
AAVGRRGGGS WKDAMVAAGF RPVGLSQFAD FQADCLLGRV QVRGFHVAKR QVEMLLCWHD  480
RALVATSAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-2613848926377Protein SCARECROW
5b3h_D4e-2613848926377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229994.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-140SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1J6IQ720.0A0A1J6IQ72_NICAT; Scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
STRINGXP_009590475.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]