PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03049g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 339aa    MW: 38654.7 Da    PI: 7.9142
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03049g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11811.4e-56201353117
                      CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                               +e ++rwl++ ei++iL n++k+ lt e++ rp+ gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+v+vl+cyYa
  Niben101Scf03049g02001.1  20 QEtQHRWLRPAEICEILRNHHKFYLTPEPPVRPPGGSLFLFDRKVLRYFRKDGHQWRKKKDGKTVKEAHEKLKAGSVDVLHCYYA 104
                               4559********************************************************************************* PP

                      CG-1  87 hseenptfqrrcywlLeeelekivlvhylev 117
                               h+e+n++fqrr+yw+Lee+le+ivlvhy+ev
  Niben101Scf03049g02001.1 105 HGENNENFQRRSYWMLEEKLEHIVLVHYREV 135
                               *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.54815141IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4922134IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADTRRYLSD QPLDLEQILQ ETQHRWLRPA EICEILRNHH KFYLTPEPPV RPPGGSLFLF  60
DRKVLRYFRK DGHQWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGENNE NFQRRSYWML  120
EEKLEHIVLV HYREVIEGYR VGASVLQPIH PGQLLESPSS SPCFVSGLIV QESHTSSPSS  180
ADWKEQALSS ELYTGDSKGN EVNPLLVPAS GHFLPITSSF STEKPTGLVE FSRESFQLNP  240
QFGSFVSIDA QSSDRNLNVT LQKKFYSGHH NVADLLSSKL TYARLDAGKA VKDVASSRNR  300
LTITSGEVLE VLYSVLKIYS CSYWWPSCLF FFQGEAARC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506959.10.0PREDICTED: calmodulin-binding transcription activator 1-like isoform X1
TrEMBLA0A1S4D1180.0A0A1S4D118_TOBAC; calmodulin-binding transcription activator 1-like isoform X1
STRINGXP_009793082.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.27e-71Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains