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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03035g01006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 24527.3 Da PI: 8.4474 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.1e-21 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++ a+++++g Niben101Scf03035g01006.1 26 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRG 75 69*******.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.736 | 26 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-22 | 26 | 83 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-39 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.52E-31 | 26 | 82 | No hit | No description |
PRINTS | PR00367 | 2.4E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSVKNKVSDG DLKGGNVKTN GVKEIHYRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE 60 EAAKAYDTAA REFRGPKAKT NFSLPSENHS PSHSSTVESS SGETGVHAPQ NAPLEMDLTR 120 RLGSVAADGG DNCRRAGEVG YPIFHQQPTV AVLPNGQPVL LFDSLWRPGV VNRPQPYHVT 180 PMAMGFNGVN AGVGPTVSDS SSVVEENQYD GKRGIDLDLN LAPPTEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 26 | 84 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-21 | 26 | 84 | 5 | 64 | ATERF1 |
3gcc_A | 9e-21 | 26 | 84 | 5 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772525.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor 4 | ||||
Swissprot | Q9LW49 | 1e-151 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1U7WE74 | 1e-149 | A0A1U7WE74_NICSY; ethylene-responsive transcription factor 4 | ||||
STRING | XP_009772525.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-27 | erf domain protein 9 |