PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02983g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 907aa MW: 100225 Da PI: 4.566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02983g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.8e-52	28	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp+G+rF+Ptdeelv++yL+ k++g + e+ +vi+evdi+k+ePwdLp + v+++++ew+fF+++d+ky++g+r nrat++gyW Niben101Scf02983g01003.1 28 LPVGYRFRPTDEELVNHYLRLKINGADSEV-SVIREVDICKLEPWDLPdMsVVESNDNEWFFFCPKDRKYQNGQRLNRATERGYW 111 799**********************999.99**********96347788999*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+++ +kkg+++g+kktLv+y grap+g++t+Wv+heyr+ Niben101Scf02983g01003.1 112 KATGKDRNIATKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156 *****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.26E-58	22	179	IPR003441	NAC domain
PROSITE profile	PS51005	55.75	28	179	IPR003441	NAC domain
Pfam	PF02365	2.0E-26	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence Send to blast
MMAVLPGDNV IAVLPVDRQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSEVSVI 60 REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI 120 ATKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN 180 DLKQDEHFES SNLDDTELNA TVAKSPTEGD LSEAATPLAV IQPFGDSDKS YAAKLPKGEM 240 YGKQLPIESH SNSCIADDTE DQMLDITSIP PDMELEKALG NFRDPSMQPL DWKIFSPLHS 300 QLQVELGSSY LQTPMNNGTG AYQKDVQFQY GTNAFDINEF LDSVIINSDE FSCEDSGQEL 360 ASHRFNTQFC SVPGAPIKDS GSCSESEAEV TQRLVEPDFF EPEVLLGNFD RENAVKREVN 420 SIGAAVQEAR GSAPYVSHDH AMGNLDFFQH SYPGQNVYPG QNVYPAGYGA IQVPNFPGVE 480 QSGGYSNVVS SDSGSGTGIK LRPRQMQNQS DDRQFRTQGT ANRRIRLQVK LQVGPVESRS 540 HTASSQGPES HQAVTEAEKA SDEHSSSTSD ESRDTTCGEN GVSGEADDLS TPVKDAYDSP 600 VQDTVDVSLK TTTKLSSSSR LYMSMVLVVV GVLVGAFVLC RLFKKNDLKQ DEHFESSNLD 660 DTELNATVAK SPTEGDLSEA ATPLAVIQPF GDSDKSYAAK LPKGEMYGKQ LPIESHSNSC 720 IADDTEDQML DITSIPPDME LEKALGNFRD PSMQPLDWKI FSPLHSQLQV ELGSSYLQTP 780 MNNGTGAYQK DVQFQYGTNA FDINEFLDSV IINSDEFSCV DSGQELASHR FNTQFCSVPG 840 APIKDSGSCS ESEAEVTQRL TSLSPRCCWA TSIERMQLKE RLTPLGPQCK RLVEVHLMLA 900 MIMLWGI

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence Send to blast

MMAVLPGDNV IAVLPVDRQM GIPPLNTLPV GYRFRPTDEE LVNHYLRLKI NGADSEVSVI  60
REVDICKLEP WDLPDMSVVE SNDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI  120
ATKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN  180
DLKQDEHFES SNLDDTELNA TVAKSPTEGD LSEAATPLAV IQPFGDSDKS YAAKLPKGEM  240
YGKQLPIESH SNSCIADDTE DQMLDITSIP PDMELEKALG NFRDPSMQPL DWKIFSPLHS  300
QLQVELGSSY LQTPMNNGTG AYQKDVQFQY GTNAFDINEF LDSVIINSDE FSCEDSGQEL  360
ASHRFNTQFC SVPGAPIKDS GSCSESEAEV TQRLVEPDFF EPEVLLGNFD RENAVKREVN  420
SIGAAVQEAR GSAPYVSHDH AMGNLDFFQH SYPGQNVYPG QNVYPAGYGA IQVPNFPGVE  480
QSGGYSNVVS SDSGSGTGIK LRPRQMQNQS DDRQFRTQGT ANRRIRLQVK LQVGPVESRS  540
HTASSQGPES HQAVTEAEKA SDEHSSSTSD ESRDTTCGEN GVSGEADDLS TPVKDAYDSP  600
VQDTVDVSLK TTTKLSSSSR LYMSMVLVVV GVLVGAFVLC RLFKKNDLKQ DEHFESSNLD  660
DTELNATVAK SPTEGDLSEA ATPLAVIQPF GDSDKSYAAK LPKGEMYGKQ LPIESHSNSC  720
IADDTEDQML DITSIPPDME LEKALGNFRD PSMQPLDWKI FSPLHSQLQV ELGSSYLQTP  780
MNNGTGAYQK DVQFQYGTNA FDINEFLDSV IINSDEFSCV DSGQELASHR FNTQFCSVPG  840
APIKDSGSCS ESEAEVTQRL TSLSPRCCWA TSIERMQLKE RLTPLGPQCK RLVEVHLMLA  900
MIMLWGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-44	27	184	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	27	184	19	173	NAC domain-containing protein 19
3swm_B	1e-43	27	184	19	173	NAC domain-containing protein 19
3swm_C	1e-43	27	184	19	173	NAC domain-containing protein 19
3swm_D	1e-43	27	184	19	173	NAC domain-containing protein 19
3swp_A	1e-43	27	184	19	173	NAC domain-containing protein 19
3swp_B	1e-43	27	184	19	173	NAC domain-containing protein 19
3swp_C	1e-43	27	184	19	173	NAC domain-containing protein 19
3swp_D	1e-43	27	184	19	173	NAC domain-containing protein 19
4dul_A	9e-44	27	184	16	170	NAC domain-containing protein 19
4dul_B	9e-44	27	184	16	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226326.1	0.0	PREDICTED: NAC domain-containing protein 62-like
TrEMBL	A0A314KRX5	0.0	A0A314KRX5_NICAT; Nac domain-containing protein 62
STRING	XP_009759914.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3363	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49530.1	8e-84	NAC domain containing protein 62