PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02909g03006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 506aa    MW: 55729.3 Da    PI: 10.9042
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02909g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.7e-151350542
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               +  r+ ++ kR++g++KK  ELS+LCd+e+a ii+s+
  Niben101Scf02909g03006.1 13 RDAERKASYKKRKKGLFKKVLELSTLCDVEIAAIIYSP 50
                              567899******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.142149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-19160IPR002100Transcription factor, MADS-box
CDDcd002661.14E-14285No hitNo description
PRINTSPR004048.2E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-22396IPR002100Transcription factor, MADS-box
PfamPF003191.3E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSP FHRGAEVWPS  60
HEQVMRTIER FRALPEIEQS KRQVNLEGFS RQRIKKLEDQ LRKIRKENRI KEFTNLMYDL  120
LGGQEVPQNM HPYDLNDLTF VIDQNLQKVY ERMVEEAKKN GFTFDVSRGH PRGTNFEEPR  180
APLAPSPVVP PVAPTSMVRP MASMSMVRPM APSMVRPFAD SSYPPPLPVP PPRLVHPMGL  240
SRALSPVPPP RMFRPVGLSS WPPAPVSQQI FRPMTAQMVS PMPPVGDTRS WATRVASSPM  300
PPTVAPRSWA PRVAFPMPPA AAPRNWTPSV ASPMPPAAAP RSWAPSVAYP RPPAAAPSVA  360
SPMPPAVAPR SLAPIVASSM PPAAAPSVAS LMPPAVAPRS LVPIVASSTP PVVAPRSLAP  420
IVASSMPLQM VPAMYPRMDF PMIPVMSHRM SSPMVPSVTT SPMANSMNSS VDALMPMTNY  480
QNYFYGNPQS APDWEEDALM AFVNVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLAFIIRDAERKASYKKRK
22125KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450765.10.0PREDICTED: vegetative cell wall protein gp1-like
TrEMBLA0A1S3YEZ30.0A0A1S3YEZ3_TOBAC; vegetative cell wall protein gp1-like
STRINGXP_009786318.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-36AGAMOUS-like 80