PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf02909g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 506aa MW: 55729.3 Da PI: 10.9042 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.8 | 3.7e-15 | 13 | 50 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 + r+ ++ kR++g++KK ELS+LCd+e+a ii+s+ Niben101Scf02909g03006.1 13 RDAERKASYKKRKKGLFKKVLELSTLCDVEIAAIIYSP 50 567899******************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.142 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.14E-14 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 8.2E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.28E-22 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-14 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSP FHRGAEVWPS 60 HEQVMRTIER FRALPEIEQS KRQVNLEGFS RQRIKKLEDQ LRKIRKENRI KEFTNLMYDL 120 LGGQEVPQNM HPYDLNDLTF VIDQNLQKVY ERMVEEAKKN GFTFDVSRGH PRGTNFEEPR 180 APLAPSPVVP PVAPTSMVRP MASMSMVRPM APSMVRPFAD SSYPPPLPVP PPRLVHPMGL 240 SRALSPVPPP RMFRPVGLSS WPPAPVSQQI FRPMTAQMVS PMPPVGDTRS WATRVASSPM 300 PPTVAPRSWA PRVAFPMPPA AAPRNWTPSV ASPMPPAAAP RSWAPSVAYP RPPAAAPSVA 360 SPMPPAVAPR SLAPIVASSM PPAAAPSVAS LMPPAVAPRS LVPIVASSTP PVVAPRSLAP 420 IVASSMPLQM VPAMYPRMDF PMIPVMSHRM SSPMVPSVTT SPMANSMNSS VDALMPMTNY 480 QNYFYGNPQS APDWEEDALM AFVNVC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RRKVRLAFIIRDAERKASYKKRK |
2 | 21 | 25 | KKRKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016450765.1 | 0.0 | PREDICTED: vegetative cell wall protein gp1-like | ||||
TrEMBL | A0A1S3YEZ3 | 0.0 | A0A1S3YEZ3_TOBAC; vegetative cell wall protein gp1-like | ||||
STRING | XP_009786318.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-36 | AGAMOUS-like 80 |