PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02904g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 415aa    MW: 46407.8 Da    PI: 6.1964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02904g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.3e-1658353129
                       NAM  53 aeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrle 129
                               ++ k+wyf s++++ky+++ ++n   + ++gyW+  g+d  +++ +g+l+g +kt  + +g ++++ ++t+W+mheyrle
  Niben101Scf02904g00016.1   5 SQAKQWYFLSPASNKYTEEGQSNSvsVNDDGYWEPCGTDSLIHK-DGKLIGYRKTQNYIEGkHDKDMKRTEWLMHEYRLE 83 
                               4678*************9888888444569***********999.99************9945566789*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.854198IPR003441NAC domain
PfamPF023651.7E-8482IPR003441NAC domain
SuperFamilySSF1019413.66E-18598IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MHHPSQAKQW YFLSPASNKY TEEGQSNSVS VNDDGYWEPC GTDSLIHKDG KLIGYRKTQN  60
YIEGKHDKDM KRTEWLMHEY RLEGSRDMQR VFCKLFKSNN KLMEAEEKDA TKFAAPIDGV  120
SSADPAIQGP EKANDVNYKG PNNGHSHNLL PMPDTDQGTT MPAPMPQHVQ GTTLTRTGQQ  180
KATNNVVRNK RPRRKRDLHP SPASLQGLMM PHLPNANSQP QRNQGIRLPP PLPQNDERKT  240
FPISTGPYKA NNGLVLTDNG PSNSLVVPFC PEYILDEPSF DWTVANSWLQ DGTMVPSRPQ  300
HGQNTILPPL TGNNANADEV SVMGLTLNHI RDAQDLPFSV ELPKLLPVQA SPPSIHENEA  360
AVAPRYDGWP LYTAETRLPP FDGPFESLTE DELAFFDNPD PGYPEAFENK KEAKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-11810074170NAC domain-containing protein 19
3swm_B2e-11810074170NAC domain-containing protein 19
3swm_C2e-11810074170NAC domain-containing protein 19
3swm_D2e-11810074170NAC domain-containing protein 19
3swp_A2e-11810074170NAC domain-containing protein 19
3swp_B2e-11810074170NAC domain-containing protein 19
3swp_C2e-11810074170NAC domain-containing protein 19
3swp_D2e-11810074170NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194RPRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772246.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_009772247.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X1
RefseqXP_009772248.10.0PREDICTED: uncharacterized protein LOC104222681 isoform X2
RefseqXP_016500362.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
RefseqXP_016500364.10.0PREDICTED: uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1S4CGQ40.0A0A1S4CGQ4_TOBAC; uncharacterized protein LOC107818826 isoform X1
TrEMBLA0A1U7W0V60.0A0A1U7W0V6_NICSY; uncharacterized protein LOC104222681 isoform X2
TrEMBLA0A1U7W4W40.0A0A1U7W4W4_NICSY; uncharacterized protein LOC104222681 isoform X1
STRINGXP_009772246.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1503569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.18e-15NAC family protein