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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf02864g06007.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
NAC |
| Protein Properties |
Length: 344aa MW: 39617.5 Da PI: 6.7212 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf02864g06007.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 129.1 | 3.4e-40 | 10 | 117 | 1 | 107 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82
+ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePw L+ k ++e++ewyfFs++dkky+tg+r+nrat +g+
Niben101Scf02864g06007.1 10 VPPGFRFHPTDEELVGYYLRKKIAAQKIDL-DVIRDIDLYRIEPWGLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMEGF 93
69****************************.9***************943432233667************************** PP
NAM 83 WkatgkdkevlskkgelvglkktLv 107
Wkatg+dk+v++ k++l+g++ktL
Niben101Scf02864g06007.1 94 WKATGRDKAVYD-KSKLIGMRKTLE 117
************.999*******96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MDTTESSSFV PPGFRFHPTD EELVGYYLRK KIAAQKIDLD VIRDIDLYRI EPWGLQDKCR 60
IGYEEQNEWY FFSHKDKKYP TGTRTNRATM EGFWKATGRD KAVYDKSKLI GMRKTLEEHP 120
MARNLTGSCM NIDSNPKKIV LRRHEEGWVV CRAFKKRNTG QAKTNINGEG WESNYFYEES 180
SGVSSIVDPL EYIPRQPPVG NFMSQNNLLC KQEIEANNNS SLNFLRSDQF VQLPHLESPS 240
LPLMKRPSSM SVLSENNRDE DDQQITKRSK INKNVNDRVT DWRALDKFVA YQLSHDDGVS 300
SYEPHNGSDL GMLLLHSGRE EGPKLDDLLS STSNRDIGIC IFDK
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-33 | 10 | 161 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-33 | 10 | 161 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-33 | 10 | 161 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-33 | 10 | 161 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 2e-33 | 10 | 161 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 2e-33 | 10 | 161 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 2e-33 | 10 | 161 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
