PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02864g06007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 344aa MW: 39617.5 Da PI: 6.7212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02864g06007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.1	3.4e-40	10	117	1	107
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePw L+ k ++e++ewyfFs++dkky+tg+r+nrat +g+ Niben101Scf02864g06007.1 10 VPPGFRFHPTDEELVGYYLRKKIAAQKIDL-DVIRDIDLYRIEPWGLQdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMEGF 93 69**************************.9***********943432233667********************** PP NAM 83 WkatgkdkevlskkgelvglkktLv 107 Wkatg+dk+v++ k++l+g++ktL Niben101Scf02864g06007.1 94 WKATGRDKAVYD-KSKLIGMRKTLE 117 ********.999*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-41	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	42.102	10	156	IPR003441	NAC domain
Pfam	PF02365	1.4E-19	11	119	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDTTESSSFV PPGFRFHPTD EELVGYYLRK KIAAQKIDLD VIRDIDLYRI EPWGLQDKCR 60 IGYEEQNEWY FFSHKDKKYP TGTRTNRATM EGFWKATGRD KAVYDKSKLI GMRKTLEEHP 120 MARNLTGSCM NIDSNPKKIV LRRHEEGWVV CRAFKKRNTG QAKTNINGEG WESNYFYEES 180 SGVSSIVDPL EYIPRQPPVG NFMSQNNLLC KQEIEANNNS SLNFLRSDQF VQLPHLESPS 240 LPLMKRPSSM SVLSENNRDE DDQQITKRSK INKNVNDRVT DWRALDKFVA YQLSHDDGVS 300 SYEPHNGSDL GMLLLHSGRE EGPKLDDLLS STSNRDIGIC IFDK

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDTTESSSFV PPGFRFHPTD EELVGYYLRK KIAAQKIDLD VIRDIDLYRI EPWGLQDKCR  60
IGYEEQNEWY FFSHKDKKYP TGTRTNRATM EGFWKATGRD KAVYDKSKLI GMRKTLEEHP  120
MARNLTGSCM NIDSNPKKIV LRRHEEGWVV CRAFKKRNTG QAKTNINGEG WESNYFYEES  180
SGVSSIVDPL EYIPRQPPVG NFMSQNNLLC KQEIEANNNS SLNFLRSDQF VQLPHLESPS  240
LPLMKRPSSM SVLSENNRDE DDQQITKRSK INKNVNDRVT DWRALDKFVA YQLSHDDGVS  300
SYEPHNGSDL GMLLLHSGRE EGPKLDDLLS STSNRDIGIC IFDK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	10	161	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	10	161	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	10	161	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	10	161	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	10	161	20	173	NAC domain-containing protein 19
3swm_B	2e-33	10	161	20	173	NAC domain-containing protein 19
3swm_C	2e-33	10	161	20	173	NAC domain-containing protein 19
3swm_D	2e-33	10	161	20	173	NAC domain-containing protein 19
3swp_A	2e-33	10	161	20	173	NAC domain-containing protein 19
3swp_B	2e-33	10	161	20	173	NAC domain-containing protein 19
3swp_C	2e-33	10	161	20	173	NAC domain-containing protein 19
3swp_D	2e-33	10	161	20	173	NAC domain-containing protein 19
4dul_A	2e-33	10	161	17	170	NAC domain-containing protein 19
4dul_B	2e-33	10	161	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016451362.1	0.0	PREDICTED: NAC domain-containing protein 37-like
Swissprot	Q9SL41	1e-123	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A1S3YHE0	0.0	A0A1S3YHE0_TOBAC; NAC domain-containing protein 37-like
STRING	XP_009761611.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-126	vascular related NAC-domain protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]