PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02849g09004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 282aa    MW: 32638.4 Da    PI: 10.6013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02849g09004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.3e-121932641588
                               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-.SSS CS
                        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkld.grs 88 
                                +++p +fa+   ++k   k++tl + +g++W+v +  +  + r+++++GW  F k+n++   g+++ Fkl+ gr+
  Niben101Scf02849g09004.1 193 FMTIPMTFARWSRIIKM--KKITLISGEGKKWKVDI--EHIGPRVLIKRGWAAFRKQNKIAaNGETCRFKLIqGRR 264
                               489******99988855..58***************..999999****************989*******994433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-135104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-126104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-69100No hitNo description
SMARTSM010199.9E-611105IPR003340B3 DNA binding domain
PROSITE profilePS5086311.46222105IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-13176262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-12176263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.01179280IPR003340B3 DNA binding domain
SMARTSM010190.0041182270IPR003340B3 DNA binding domain
PfamPF023626.1E-10191262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLVDPDKYPS FCKLLFRQGF TDKILMPPVF IKENKKKLAK TCLLKTDIAA AMSWEARIVR  60
KNSYFFISDG EWPKFVAHHK LKLGDILLFF LVDKSTFRVL PYGQKTYKNL CRRQLFEELS  120
SSSEEELDVG IGLSRKSKKV KTEPKELPGI AEEEEAQDGS KENGRKTHRY SVVNLKNKNP  180
YYEMAVSKTH SLFMTIPMTF ARWSRIIKMK KITLISGEGK KWKVDIEHIG PRVLIKRGWA  240
AFRKQNKIAA NGETCRFKLI QGRRRGRGPS CYVLQVEKIS KP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780425.11e-172PREDICTED: putative B3 domain-containing protein At5g66980 isoform X1
TrEMBLA0A1U7X1S51e-171A0A1U7X1S5_NICSY; putative B3 domain-containing protein At5g66980 isoform X1
STRINGXP_009780425.11e-172(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48881327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-09B3 family protein