PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02849g09002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 292aa    MW: 33102.7 Da    PI: 6.4488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02849g09002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.1e-11581371398
                               TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               +++ ++p +fa+++ ++  ++  + le ++g++Wev++    ++g++ l++GW++F +   +  g f++F ++ rs f  +v++f
  Niben101Scf02849g09002.1  58 LCMQRIPEHFASRYCKNMLNP--VYLEVPTGEVWEVEV--VLCQGQICLGSGWQDFHDFYSISCGHFLMFGYNARSHF--NVTIF 136
                               47889*********5454444..***************..889999**************************999999..99998 PP

                               - CS
                        B3  98 r 98 
                               +
  Niben101Scf02849g09002.1 137 D 137
                               7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001550139IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-1551137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1554138IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-1058137No hitNo description
PfamPF023627.2E-858137IPR003340B3 DNA binding domain
PROSITE profilePS508639.61563139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAAKPQLQSG EGSSRWKSST AEIPQPKFFK IIFSQRECSR LVYFTVIPDV LKLSPGLLCM  60
QRIPEHFASR YCKNMLNPVY LEVPTGEVWE VEVVLCQGQI CLGSGWQDFH DFYSISCGHF  120
LMFGYNARSH FNVTIFDLGA SEIEYPYSSS QGIHTPIFHC HETRHASKRD QSESDDSVEI  180
PECIPRSHKA KAIIPDTVEH SVENLGHCPL GQSSKRKGQE GDAEHDVSVD VHVRRMKVEK  240
LQEDFFMFPA GEAFALDKKL KFHDVYIFEV IKGTKLFIEV TIFPAAGEHT SV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240382.11e-160PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1S4A7S51e-132A0A1S4A7S5_TOBAC; B3 domain-containing protein Os11g0197600-like isoform X1
TrEMBLA0A1S4A7Y71e-132A0A1S4A7Y7_TOBAC; B3 domain-containing protein Os11g0197600-like isoform X5
STRINGXP_009622351.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-17B3 family protein