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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02835g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 296aa MW: 32803.2 Da PI: 8.8067 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.3 | 1.9e-14 | 215 | 270 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee.lkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe + +Le+eN+ L ke ee k ++++ Niben101Scf02835g00012.1 215 MQRQRRMIKNRESAARSRERKQAYQVELESMAVKLEEENELLLKEKEErTKAHYKQ 270 58**************************************9877766504444554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-10 | 212 | 277 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.22 | 214 | 262 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.9E-13 | 215 | 268 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 8.11E-13 | 216 | 243 | No hit | No description |
SuperFamily | SSF57959 | 2.25E-9 | 216 | 266 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.4E-12 | 217 | 270 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 219 | 234 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MASMKLMSSS ASRNSDRRKS SASSSSSSST MPHDLQFSNN GSNNSSCNLE ATSVTPDVIF 60 RNVYGESHNN ALLNTEITLL DAAGAITPIS DSETPTATAV TASELTPARR TVDDVWREIV 120 EGKREKQRAA VVAGCKEEMM TLEDFLVKAG AVEEEAVAPV LGPEVKVELG TERLSGGIFA 180 FDNSAPYMAT PQQSAPGFGR GRRKAVLEPL DKAVMQRQRR MIKNRESAAR SRERKQAYQV 240 ELESMAVKLE EENELLLKEK EERTKAHYKQ LIEKVIPVVD KQKPRRVLRR VCSMQW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009803830.1 | 0.0 | PREDICTED: G-box-binding factor 4-like | ||||
Refseq | XP_016491915.1 | 0.0 | PREDICTED: G-box-binding factor 4-like | ||||
Swissprot | P42777 | 9e-45 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A1S4BSQ0 | 0.0 | A0A1S4BSQ0_TOBAC; G-box-binding factor 4-like | ||||
TrEMBL | A0A1U7YYN1 | 0.0 | A0A1U7YYN1_NICSY; G-box-binding factor 4-like | ||||
STRING | XP_009803830.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2771 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 5e-38 | bZIP family protein |