PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf02816g02008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HRT-like

Protein Properties

Length: 419aa MW: 46994.3 Da PI: 9.6916

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02816g02008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	53.8	3.3e-17	237	266	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+l++GsvC+r+P+ g+KRC+eHKGm+ Niben101Scf02816g02008.1 237 TCGVALGHGSVCMRPPITGNKRCAEHKGMK 266 7****************************7 PP
2	HRT-like	45.1	1.7e-14	289	318	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G +C r+P + +KRC eHKG+R Niben101Scf02816g02008.1 289 ICGFILDGGAPCARKPFQRNKRCLEHKGRR 318 8****************************9 PP
3	HRT-like	66.3	4.1e-21	375	405	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dGs+C+rqPv gRKRCeeHKGmR+ Niben101Scf02816g02008.1 375 ICGVHLTDGSFCTRQPVAGRKRCEEHKGMRV 405 8*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00357	88	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLPGKGGAEK YRTQNLPNCT 60 SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN 120 SELLHDQEHV SASKRAGLFT EAFSRGFSIV YRWVPMNDNK DAEKTESQLL DRFDYAWNKG 180 SNGVRRHNHV LHKLDGISRA TRLPAFVRKL QLSLGKQKGV RIKPCKPLIV NGDPNTTCGV 240 ALGHGSVCMR PPITGNKRCA EHKGMKEEIH VINESTRPCA RRGEENAPIC GFILDGGAPC 300 ARKPFQRNKR CLEHKGRRNG GCISQPVTDK NGQSILEYRT YSSNDCHQML SRRADTQHPQ 360 YFASCPLINQ NHNVICGVHL TDGSFCTRQP VAGRKRCEEH KGMRVKEPIS KQLGAEIPS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MGDTHRSITV RLKREDCKRT KHDSAFSDWK ILIGPNDWTD YLPGKGGAEK YRTQNLPNCT  60
SCSGVYELGI AVTRHQAGRE ASRLDPDYIV PVYVGKSDNV RTRLQRYGRE GAHLENGCSN  120
SELLHDQEHV SASKRAGLFT EAFSRGFSIV YRWVPMNDNK DAEKTESQLL DRFDYAWNKG  180
SNGVRRHNHV LHKLDGISRA TRLPAFVRKL QLSLGKQKGV RIKPCKPLIV NGDPNTTCGV  240
ALGHGSVCMR PPITGNKRCA EHKGMKEEIH VINESTRPCA RRGEENAPIC GFILDGGAPC  300
ARKPFQRNKR CLEHKGRRNG GCISQPVTDK NGQSILEYRT YSSNDCHQML SRRADTQHPQ  360
YFASCPLINQ NHNVICGVHL TDGSFCTRQP VAGRKRCEEH KGMRVKEPIS KQLGAEIPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779864.1	0.0	PREDICTED: uncharacterized protein LOC104228998
Refseq	XP_016459080.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1S3Z3R6	0.0	A0A1S3Z3R6_TOBAC; protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1U7WYW0	0.0	A0A1U7WYW0_NICSY; uncharacterized protein LOC104228998
STRING	XP_009779864.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-84	effector of transcription2