PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02793g25012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 190aa    MW: 20271.5 Da    PI: 10.0697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02793g25012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-063659225
                              -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                              k ++C  f+ t  C++G++C+F H
  Niben101Scf02793g25012.1 36 KSKPCTKFFSTAGCPFGENCHFLH 59
                              7789******************** PP
2zf-CCCH26.21.4e-0897121226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt+lC+ f     Ck+Gd+C+FaHg
  Niben101Scf02793g25012.1  97 KTKLCNKFNSAEGCKFGDKCHFAHG 121
                               89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843462IPR000571Zinc finger, CCCH-type
SMARTSM003560.773461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-63561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-83659IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-1493125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-894125IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.64895123IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-697121IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDLRKRNRNE GGFNANGGFK KAKSEMDSLS SGIGSKSKPC TKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMNMAPSPAS RNAAAPPMPN GNTPAVKTKL CNKFNSAEGC KFGDKCHFAH  120
GDWEIGKPIM PSQEDPRAMG AGPIPGRFGG RMEPPPISGP AASFALLAAL LVKAATFFIM  180
FLVAIMLWPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614706.11e-115PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016477421.11e-115PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R09e-46C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4AL761e-114A0A1S4AL76_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009614706.11e-114(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1996433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.14e-34C3H family protein