PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02786g02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 288aa MW: 32397.2 Da PI: 9.4169 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.3 | 3.9e-40 | 40 | 188 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssas 71 a kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k + el++ +ss+ s Niben101Scf02786g02005.1 40 AYKKDRHSKINTARGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLTKSKSPVNELVQGinkencstanigaisTSSTTS 124 78**************************************************************999999999998876555556 PP TCP 72 ec......eaesssssasnsssg........kaaksaa.kskksqksaasalnlakesrakarararertrekm 130 ec ++++ + + + ++ k +k + a+++ +akesr++arararert+ k+ Niben101Scf02786g02005.1 125 ECevvsgiDESTT---------TndiqkqpnRGKVGEKkKANKLVR-RAAFNPVAKESRKQARARARERTKIKK 188 7755543222222.........122223333444444414444444.444899999**************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-43 | 42 | 188 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.947 | 42 | 100 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.477 | 170 | 187 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAADSNKDTV ISSTNQDPEE VELQGSCKKK KGDNKRVAAA YKKDRHSKIN TARGPRDRRM 60 RLSLDVARKF FNLQDLLGFD KASKTVEWLL TKSKSPVNEL VQGINKENCS TANIGAISTS 120 STTSECEVVS GIDESTTTND IQKQPNRGKV GEKKKANKLV RRAAFNPVAK ESRKQARARA 180 RERTKIKKSF LNIGDKSMAA DDLKRLGCWS PFETGEESGI QGTNHQVEEH TTHHEEPLLG 240 TNENVDDCNL VVTGNWNPYT IFNYHHSTEI SHEQQFINWQ FSGKFWEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019244778.1 | 0.0 | PREDICTED: transcription factor DICHOTOMA-like | ||||
Swissprot | Q8LN68 | 6e-28 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A1J6JE48 | 0.0 | A0A1J6JE48_NICAT; Transcription factor teosinte branched 1 | ||||
STRING | XP_009787900.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 4e-28 | TCP family protein |