PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02762g01001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 318aa MW: 36966.4 Da PI: 6.7416

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02762g01001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	4.8e-56	22	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF+Ptdee++++yL++kv +k++++ +++evd++k+ePwdLp+k+k +ekewyfF +rd+ky+tg r+nrat+sgyWka Niben101Scf02762g01001.1 22 LPPGFRFRPTDEEIITCYLREKVMDKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFWQRDRKYPTGMRTNRATESGYWKA 105 79***********************999.88***********99999**************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkdke+++ kg lvg+kktLvfykgrapkgekt+Wvmheyrl Niben101Scf02762g01001.1 106 TGKDKEIYKVKGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 148 ***************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-62	19	171	IPR003441	NAC domain
PROSITE profile	PS51005	58.846	22	170	IPR003441	NAC domain
Pfam	PF02365	9.6E-29	23	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGTCMQVINE EADLHRDDIL DLPPGFRFRP TDEEIITCYL REKVMDKRFT AIAVAEVDLN 60 KSEPWDLPAK AKMGEKEWYF FWQRDRKYPT GMRTNRATES GYWKATGKDK EIYKVKGCLV 120 GMKKTLVFYK GRAPKGEKTN WVMHEYRLHG KLSFHKPAMD EWVICKVFHK NIGIRRGSPF 180 MEDLLDSPSS INDSSDVRDE LNIKAATTTP TFDEIQSSAY FSSDIFNNYG YEQQLLREYE 240 KSYGSFVPTH IFTGIHDYQH NNQLASSSNS SFNYDHSLPP NSKFSDYSLE RQHLSSNNKS 300 MNHFDSNIAA DLDSIWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-53	20	171	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-53	20	171	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-53	20	171	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-53	20	171	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-52	20	171	18	169	NAC domain-containing protein 19
3swm_B	1e-52	20	171	18	169	NAC domain-containing protein 19
3swm_C	1e-52	20	171	18	169	NAC domain-containing protein 19
3swm_D	1e-52	20	171	18	169	NAC domain-containing protein 19
3swp_A	1e-52	20	171	18	169	NAC domain-containing protein 19
3swp_B	1e-52	20	171	18	169	NAC domain-containing protein 19
3swp_C	1e-52	20	171	18	169	NAC domain-containing protein 19
3swp_D	1e-52	20	171	18	169	NAC domain-containing protein 19
4dul_A	8e-53	20	171	15	166	NAC domain-containing protein 19
4dul_B	8e-53	20	171	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009786013.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Swissprot	Q9FK44	7e-93	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1U7X592	0.0	A0A1U7X592_NICSY; protein CUP-SHAPED COTYLEDON 1-like
STRING	XP_009786013.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-95	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]