PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02735g01004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 362aa    MW: 41219.6 Da    PI: 6.405
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02735g01004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.8e-52141411128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk +  +ekewyf+++rd+ky+++ r+nr+t +g+Wka
  Niben101Scf02735g01004.1  14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLAPVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 
                               579***************************.89***************8888899****************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Niben101Scf02735g01004.1  98 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                               *********956677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-5512143IPR003441NAC domain
PROSITE profilePS5100552.79714156IPR003441NAC domain
PfamPF023651.2E-2516141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP  60
KLAPVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP PNSSFSFLVP ENTTSDFLTN  180
SHFTNYSNEI SLINKSSSPI QYSGSTIIDI QNSSSNMTTF STLDLPLYKA LNSNYDPITS  240
YTFSSCTETS EILPLPKCIN MNNNNIDASS LLLNMSSSIF GDYSIPLPEN IEGGGVLDQE  300
TILKEANHVN NMDHMEEQWR NVRSIGLLPL NMAADAWKTN LLWDSSPCPS SEMSTSYSTN  360
KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5011411140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016437383.10.0PREDICTED: protein FEZ-like isoform X2
SwissprotQ9ZVH02e-91FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3XCA50.0A0A1S3XCA5_TOBAC; protein FEZ-like isoform X2
STRINGXP_009782166.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.17e-94NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]