PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02694g03002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 399aa    MW: 43682.6 Da    PI: 6.5124
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02694g03002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09214265556
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                               kr++r   NR +A rs +RK  +i+eLe++v++L++e ++L  +l  l+   
  Niben101Scf02694g03002.1 214 KRAKRIWANRQSAARSKERKMRYIAELERRVQALQTEATSLSAQLTLLQRDT 265
                               9*****************************************9999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.6E-15210274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.668212275IPR004827Basic-leucine zipper domain
PfamPF001708.6E-9214265IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10214265No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-8214267No hitNo description
CDDcd147032.29E-24215264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDKEMCVGGL LPPSGNFSLF SPSGSSYSVK SEPSGSSNLP PLGPVPASEP KANQFSHDIS  60
RMPDNPPKNL GHRRAHSEIL TLPDDISFDS DLGVVGGLDG PSLSDETEED FLSMYLDMDK  120
FNSSSATSSF QVGESSSGSL QAPAMGFTAS RTDNVTAAVS EKPRVRHQHS QSMDGSTIIK  180
PEMLMSGGED PSSAETKKAM SAAKLAELAL IDPKRAKRIW ANRQSAARSK ERKMRYIAEL  240
ERRVQALQTE ATSLSAQLTL LQRDTNGLCA ENSELKLRLQ TMEQQVHLQD ALNDALKEEI  300
QHLKVLTGQG ITNAGPMMNF PASNNGGNQQ FYSNNHAIHA SLMAQQLQQL QIHSHKQQHR  360
FQHHQLHQQE QQLQQAGDMK LRSSSSSAQN DHASDNRMD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236758.10.0PREDICTED: probable transcription factor PosF21 isoform X2
SwissprotQ040881e-143POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A1J6KDA30.0A0A1J6KDA3_NICAT; Putative transcription factor posf21
STRINGXP_009605235.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-135bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]