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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02632g07001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 256aa MW: 28138.3 Da PI: 8.9425 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.6e-38 | 28 | 87 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +al+cprCds ntkfCyynny+lsqPr+fC++CrryWtkGG lrnvPvGgg+rk+k+s Niben101Scf02632g07001.1 28 QPQALNCPRCDSLNTKFCYYNNYNLSQPRHFCQSCRRYWTKGGILRNVPVGGGCRKSKRS 87 56899****************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 26 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.6E-33 | 30 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.161 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MQDIYSIGGG GGRFYGGSGS DRRLRLNQPQ ALNCPRCDSL NTKFCYYNNY NLSQPRHFCQ 60 SCRRYWTKGG ILRNVPVGGG CRKSKRSKPK PSAVSTTDNT CQENKSNSNS NSGSESCSLT 120 AITSTATAAN TSIAMTPEVV LGNSSNPTLP DVQYSRFLVT ETTKGDFIDQ QVVGRHTTEE 180 QIFRDIGASP INVNNISMYQ NSNVCFFDRT AHVELSGRRA NDGGLAPVDW QTRGLFGMME 240 NSDHRYALSL KLSLTN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019224676.1 | 1e-131 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A314KV90 | 1e-130 | A0A314KV90_NICAT; Dof zinc finger protein dof5.4 | ||||
STRING | XP_009786397.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16953 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-32 | OBF binding protein 4 |