 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf02563g01008.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 191aa MW: 22430.3 Da PI: 6.1541 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf02563g01008.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.5 | 5.3e-19 | 44 | 97 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le+ Fe ++++ +e++ +LA++lgL+ qV+vWFqN+Ra++k+
Niben101Scf02563g01008.1 44 KRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKN 97
45899***********************************************95 PP
|
| 2 | HD-ZIP_I/II | 110.6 | 1.1e-35 | 43 | 129 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kr+ls+eqv+lLE+sFe e+kLe+erK +la+eLgl+p+qv vWFqn+RAR+k+k+lE++y++Lk+++d+ e++rLe+e ++
Niben101Scf02563g01008.1 43 RKRKLSEEQVNLLEQSFEDEHKLETERKDKLASELGLDPHQVSVWFQNKRARYKNKKLEEEYSRLKTEHDTAIVEKCRLENEIQK 127
8***********************************************************************************9 PP
HD-ZIP_I/II 87 Lr 88
L
Niben101Scf02563g01008.1 128 LL 129
96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MVLISQYYPD IYTQLISEPG EAKRRRRRKK NKGEGSSNSG VMRKRKLSEE QVNLLEQSFE 60
DEHKLETERK DKLASELGLD PHQVSVWFQN KRARYKNKKL EEEYSRLKTE HDTAIVEKCR 120
LENEIQKLLL ERNCDGVSSN SPISTSSLTM DQQPFLGEFG MEGMLMDNLF FVSENTYNYH 180
EGLEWVNPIY I
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 22 | 27 | KRRRRR |
| 2 | 23 | 29 | RRRRRKK |
| 3 | 27 | 45 | RKKNKGEGSSNSGVMRKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
