 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf02549g02006.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
C2H2 |
Protein Properties |
Length: 359aa MW: 39629.7 Da PI: 8.5606 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf02549g02006.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 21 | 43 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Niben101Scf02549g02006.1 21 FKCEKCSKKYAVQSDWKAHAKTC 43
89******************998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 359 aa
Download sequence Send
to blast |
ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVQSDWKAHA KTCGTREYRC DCGTLFSRRD 60 SFITHRAFCD ALAQETARNP VPIHNLGNFS KMQNSTILDQ KYPSSNSIDM LSLGNTKTTH 120 NQQFNHNLVG TSNIASNTSN SFFFQESNQD YANIKPIHDL MQQLPNFHNN NMFNLNFFQN 180 NDGNSNLSSG ILGDQNISCS IPCLYGSQVQ NHTLNSTTTS SVAPMSATAL LQKAAQIGST 240 TSNISTTASL LKAFGNSTNG GNSSSSATKS DHQAVNFGDI FSDHSSPGDI VNGVNAYGHD 300 QNDYGGGYNT ATKLNFEQQR HHQLPPLKKQ LTRDFLGVGE IVRSMSEGFN SQREQQQQQ
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |