PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02549g02006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 359aa    MW: 39629.7 Da    PI: 8.5606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02549g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-052143123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              +kC++C+k +  +s+ k H +t+
  Niben101Scf02549g02006.1 21 FKCEKCSKKYAVQSDWKAHAKTC 43
                              89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-5842No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5942IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVQSDWKAHA KTCGTREYRC DCGTLFSRRD  60
SFITHRAFCD ALAQETARNP VPIHNLGNFS KMQNSTILDQ KYPSSNSIDM LSLGNTKTTH  120
NQQFNHNLVG TSNIASNTSN SFFFQESNQD YANIKPIHDL MQQLPNFHNN NMFNLNFFQN  180
NDGNSNLSSG ILGDQNISCS IPCLYGSQVQ NHTLNSTTTS SVAPMSATAL LQKAAQIGST  240
TSNISTTASL LKAFGNSTNG GNSSSSATKS DHQAVNFGDI FSDHSSPGDI VNGVNAYGHD  300
QNDYGGGYNT ATKLNFEQQR HHQLPPLKKQ LTRDFLGVGE IVRSMSEGFN SQREQQQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-341778364Zinc finger protein JACKDAW
5b3h_F3e-341778364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762293.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
SwissprotQ8GYC11e-55IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A1U7V7C00.0A0A1U7V7C0_NICSY; zinc finger protein JACKDAW-like isoform X1
STRINGXP_009762293.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.21e-43indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]