PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf02547g02012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 325aa MW: 36686.3 Da PI: 7.7027

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf02547g02012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	106.7	1.2e-33	62	167	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae+h + + e+++ l +ede g+sW+++++y+++s++yvltkGW++Fvk+++L++gD Niben101Scf02547g02012.1 62 FEKPLTPSDVGKLNRLVIPKQHAEKHfplngthNDSGEKGFLLNFEDELGKSWTFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGD 146 99*************************999944456899**************************************** PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 fv+F++++ ++ + +++++r+ Niben101Scf02547g02012.1 147 FVLFERHRLDGDRTFIGWRRR 167 ***7544888899999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-41	53	171	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.16E-31	57	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.46E-31	60	157	No hit	No description
Pfam	PF02362	1.2E-30	62	168	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-27	62	168	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.339	62	168	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MSMNHCPSQF AEPFWCRTKQ HYIMESTRKS SPLNHKNQTT STSLCPNSNQ LEENEIPKEH 60 LFEKPLTPSD VGKLNRLVIP KQHAEKHFPL NGTHNDSGEK GFLLNFEDEL GKSWTFRYSY 120 WNSSQSYVLT KGWSRFVKEK KLDAGDFVLF ERHRLDGDRT FIGWRRRNAA AGATVLEQES 180 GVAPPGGGGG GWGQVYYGGS GHPYPSAGVP YQPDCLHAGR RVMNNQTAAN GNNTRRQVRL 240 FGVNLAECEV DESSWSEPST SDGSSTPSHH QQSHEYQGQA GQPYYQYQAH CSNPPAASSY 300 AKNIHHNNMD VDYSRDMNQM RYHQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-49	58	167	4	113	B3 domain-containing transcription factor NGA1
5os9_B	9e-49	58	167	4	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761495.1	0.0	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	2e-65	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1U7VI14	0.0	A0A1U7VI14_NICSY; B3 domain-containing protein At2g36080
STRING	XP_009761495.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-66	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]