PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf02537g13011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 1001aa MW: 109756 Da PI: 4.535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 254 | 275 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F++k++L +H+ +H Niben101Scf02537g13011.1 254 HCDKCNVTFNNKDDLLQHQLSH 275 5******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 10.254 | 125 | 198 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 7.19E-8 | 133 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF01429 | 4.2E-5 | 133 | 179 | IPR001739 | Methyl-CpG DNA binding |
SMART | SM00355 | 0.0048 | 253 | 275 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 253 | 280 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.42E-6 | 254 | 319 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 255 | 275 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.32 | 297 | 319 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 297 | 324 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 299 | 319 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1001 aa Download sequence Send to blast |
VCVPESSNVG SIGQKRKRGR PRKNENETEN ENVGVGGGGV DRGTDVAIKD IVVYQNVDDN 60 GDRDDKEMLN KDGEPVDLAV LGMLEDPFGE EMRRRTEGLG SSEELLRFLG RLNGQWGSTR 120 KKRRIVDAGE FGNVLPKGWK LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL 180 HGERNENPPT YAKSSGTAEL TNTCALVSTS DLQNGSNNEG PPFHNSSPAV DHGELQVLLN 240 FGELSEVQVG DLLHCDKCNV TFNNKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ 300 FCHKTFEERR RYNGHVGAHV KNQVKTADGS VSINVGEFVE PVASSGAMLR ESIMQDSVVS 360 LRNLTEIADV SADYGRKFAS PGKLQEEDHM EIDDKLEGLS EALNTAPNKT NMCLSSEVIT 420 CNNMGNIYCD SLIANVVAEG TNKGFHKQEG NSVSCSTISL KEQTCVNTSK VIDCSIVEEP 480 EQETGIVDSC GVSVEDGKFS PAVEESKVES DTFVDNESST ALCSNVSVLD ENSLTNAKQV 540 PCTEDHSGKN IDVLNRVPFL AVTSKESRGL SSTGTPSCDE EGSTVDYVKR VFPGCIGEQK 600 PSSIMCDIEN DECGSLVDSN DNKLIMKEDS CSFVPNPDKH VNTAEKDASD GSACFLEEPE 660 QQKGDENGLL SPACDKNGVE AQLLNDSKTT TDEPKVSELQ SVSSNITGFP CNNHAVQKAD 720 AKASTRENTT NRSYNNPLNG SRFDGLENSR HHDLNVVFGN SHVDLDANLN CTTFQLGMEE 780 TYGFQANLLG RFESDKHGEV GIDLSASAFK GKTGDFESNF NTVFHSQLWD EQKVDEVGDS 840 GKKIITGFGC GDAKPDEDVM AGSIWRTGVE NVIHGDSADN STLVVQSSNC FQTYDVLSDK 900 VPSLFGENEK YDGNTGFDGM RSDRTGPVEY SFMSTQSLTS LQEEPRALPY DVDIEQGFNT 960 SFWLGKDDLM PNLAGRNQDY EIKIFVFFRT EKILMGGGLL N |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009778516.1 | 0.0 | PREDICTED: uncharacterized protein LOC104227857 | ||||
TrEMBL | A0A1U7WMK7 | 0.0 | A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857 | ||||
STRING | XP_009778516.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7850 | 16 | 19 |