PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02537g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 458aa    MW: 51013.2 Da    PI: 6.1084
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02537g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.81.5e-37179276298
                    DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehd 85 
                               lfqrlwse+Deiv+L+G++d++ k++++p++d++af++f+kks++++vsk+ql +KirrLKkK++++  k +k +ke +fsk+h+
  Niben101Scf02537g02003.1 179 LFQRLWSEDDEIVILKGMVDYRLKKKSDPVADLSAFHDFIKKSLHVDVSKTQLQDKIRRLKKKYENNAGKeKKGKKERTFSKPHE 263
                               79******************************************************************99455667999****** PP

                    DUF573  86 qkifelskkiWgs 98 
                               qk++elskkiWg+
  Niben101Scf02537g02003.1 264 QKSYELSKKIWGK 276
                               ***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-34180275IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAKKHTEEEE ESGDEMEVSS PGNAESESES ESESGSESEP EPEKQQPPLK KPPVAAPKKP  60
QPPEDSSSSA EESGSESESE SESEPGNQKP NPVTVKPLAS KPMDDPKKSA PKPRSKPNAA  120
AKPTSPPPAK PSAGAGAKRP VAVDDAETKE SKRSKKTLKK EIETPVKQKT PTEDVKRQLF  180
QRLWSEDDEI VILKGMVDYR LKKKSDPVAD LSAFHDFIKK SLHVDVSKTQ LQDKIRRLKK  240
KYENNAGKEK KGKKERTFSK PHEQKSYELS KKIWGKEKTD NKGEKVEEVD RVVENGTTSK  300
KGQSKSEGND NVVMENGVEQ GEEQSAEVVK REKNIEVAAQ NLSLVSCERS VADLEKWLEE  360
NFGLISIETR NEMKEKLMSL KLAEFDLCFR RAELITEQGK LVREAMGASG IDILQKFWKF  420
DAVSSDIVDF KNLRALNRAI PIVLSTHEHA AQNNVDNC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508976.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A1S4D6K10.0A0A1S4D6K1_TOBAC; mediator-associated protein 1-like
STRINGXP_009799939.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-23DNA-binding storekeeper protein-related transcriptional regulator