PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf02511g04008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 372aa    MW: 41509.2 Da    PI: 5.1824
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf02511g04008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29144205159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDg++WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+rs+edp+++e+tY+g+H+++
  Niben101Scf02511g04008.1 144 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRhvqGCLATKQVQRSDEDPTIFEVTYRGRHTCN 205
                               59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.02139202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-28141205IPR003657WRKY domain
SuperFamilySSF1182901.01E-25143206IPR003657WRKY domain
SMARTSM007743.9E-41144206IPR003657WRKY domain
PfamPF031061.4E-26145204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MENYGANNNE VDRIISELSE GRDLVHQLQL QLNAPYSSSS SSPETTRDFL LHNIQSKFDK  60
ALSLLQYSTG DTSNSLLPLS NSVPIYNFGR SESPPSFIAS PPHSEDSDRD LEPKDPATRK  120
RKSSTPRWTK QVQIFPGAPI EGTLDDGFSW RKYGQKDILG AKYPRGYYRC TLRHVQGCLA  180
TKQVQRSDED PTIFEVTYRG RHTCNQGGGS GNNNNVMNPA PLNIIPQNQE QNLGAGSGNE  240
HQQIIPLPHQ NSQEILLNFQ RDLNISNDNN FNFNNDPNNV PFSTFASSFD IKADQDYSFM  300
PHSMTQSSNF VENFSQSYMS AGTSGLSSSY FGMSSNSEMN SFGGKQNGSN DYQFNSMGYE  360
SNFPFDHQGF SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19144204868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122TRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239237.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A1J6JVL10.0A0A1J6JVL1_NICAT; Putative wrky transcription factor 41
STRINGXP_009801586.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-44WRKY family protein